Lcla003666.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01029132.1:16950-22253[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.27 28 6.0 1.8 1 23 439 461 439 461 0.97 2 19 0.02 2.1 9.5 0.5 2 23 516 537 515 537 0.96 3 19 2.3e-05 0.0023 18.8 0.9 1 23 595 617 595 617 0.95 4 19 0.1 11 7.3 0.1 2 23 621 642 620 642 0.95 5 19 4.6e-06 0.00048 21.0 1.3 2 23 676 697 675 697 0.97 6 19 0.00048 0.05 14.6 0.9 1 23 701 723 701 723 0.98 7 19 0.00078 0.081 14.0 0.5 1 21 729 749 729 753 0.92 8 19 7.6e-05 0.0079 17.1 4.1 1 23 819 841 819 841 0.97 9 19 4.8e-05 0.0049 17.8 3.8 1 23 887 909 887 909 0.97 10 19 0.00033 0.034 15.1 0.7 1 20 914 933 914 935 0.94 11 19 0.055 5.7 8.1 0.3 2 23 946 967 946 967 0.97 12 19 3.4e-05 0.0035 18.2 0.6 2 23 1006 1027 1005 1027 0.97 13 19 3.1e-05 0.0032 18.4 1.6 1 23 1032 1054 1032 1054 0.95 14 19 0.00017 0.018 16.0 2.9 1 23 1060 1082 1060 1082 0.98 15 19 5.4e-06 0.00056 20.7 0.4 1 23 1098 1120 1098 1120 0.95 16 19 4.4e-07 4.6e-05 24.2 0.6 1 23 1126 1148 1126 1148 0.99 17 19 0.00022 0.023 15.7 0.2 1 23 1154 1176 1154 1176 0.97 18 19 0.0009 0.093 13.7 4.2 1 23 1182 1204 1182 1204 0.96 19 19 0.013 1.3 10.2 0.4 1 20 1210 1229 1210 1231 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAAATAAATACGTCGGAGTCACCGCAAAATGAAGAGGGAATTGTTTCTGCAATGGAAATATGTAGAGTTTGTTTGcttggaaatttattaatgcGAGACCTTTTCCATGATAATGGGGTCGCATCATTGTCCGCTAAGGCCATGAGCTTTACCAACATTAAGatgtTACCGGGTGATGGACTACCAGGACAAGTTTGTTGTGATTGTGCCGATAAACTAGAAGCTGcctatgattttaaattacaagtgGAGCAAGCTGATAATGtgttgagagaaaaatttgacaCTTTGAACATAAAAGaagagttattttttaatgacgtGGAAGTTCATTTAGAGGGAGAGAGAACGCGTGTAAGGCgtgaaattaatgataatgGTGAATATGTCGAGGCAACAGAATCATTACACGACGATGGCAGAGACACTCTCTTAAAAGATCATCTTGCACTTTtacaagttgaaaaaattgcagaaCAAGAGAGCATGTTACAGCACgatttttgttCAGGTGTAGAGCACTTGCAAGAGCAACTTCAGGAAGAATTACACGAGGATGaattagaagaagaagaagagttACCAGAGGAAGAGCAACTGCAGGAACAACATTTACAAGAGGAACATTTACAGGAACAACATTTACAAGAACAACATTTGCAAGAGCATCATTTACAGGAACATCATTTACAGGAACATCATCTACAAGAACATCATTTACAGGAGCATCATTTACAAGAACAACAAATGCAAGAAGAACATCTTCATGAAGAACATTTACAAGAAGAACATTTACAAGAGCAACTCCAAGATGATGATCTAACTGATGATCTCGATAAACAACCAAATGACGAATTACTCCAGTTGCAACAAATTTCCCAATCAGTGCACAATTTTTCCGATCAACAACGTGGCATCAAGGATGAAAATCTCCAGGACGTTGAGTCTGAGAATATTCCGGAACAAAATTACCTTGATCATCAGGAATGCTCGCAAATGAGTGATGACGATTTTAATAATGATGAGCCTTTCGCTGATACCCAAGAATCCATGGAATATTCGTCTCTAGAAAAGGAAAGAGAAATGGAACAGGATCAGGATCAAGAACATTCCCCAATGGATGATTCGGTTGAACAAATGGAACATGAATTGCCACAAAATGAAACACGACGTAGTAAACGTAAAGTAATTCGTCGATCGACCGGATCGGAACACAATTCCGATGAGGagaattatttcgaaaatttgaatttaagttCACGTTTGAAGAAAACACAGGATGATAAATCTGAGAAAGTCTTCTTCATGTGTTATCTTTGTGACaaggaatttttatcaaaGGGAATTTTAAAGGAACACATGCACTCACACGAGGAGGTGAGACGAACTCTTTCTCTGAAGAAAGTTGACAATAAAACGCAAAAAGTGACTGTCGTTCAACAAAAACCAATGCCTTCGCAGAAAATTCCTGTCACACCACAAAAATCGTCATTATTACCATTAAAAACGCCGCCATCTGGAAAGAAAGCAAATAAATGTCCATATTGCGGTAAAGAATATCTGTACATAATTTCCTTCAACAAACATATAAAACAAcatgaaaaagagaaagacgTCAAGAAGAGTGAATTTATGTCAACAGGTGACAGTTTTCATGAGGATGATGATTCTATCGATTACGTTGAAAATGTGAATTCCATCAGTGCTTTAGAAACAAGCGTCGAGGATATTAATGATTCCGAATCGGAAAATGACAAGGAATCAGAAATTTATCAATGTGAAAAGTGTCCTGAGAAGTTTAGCAATAAGCGAGCTCTCCAAAAACACGGAGTCAagcatataaatttaaaatgttcagTTTGTGACGTAGAATACGAATCATTGGAGAAGTTGAGCGAGCATAGAATTGAACACGTCACCGAGGGTGTATTGACCGAGGAAGATTTACGAAAAGACGCCGAGGAATGGAATGTCATTGATGACAAGGATGAGATGGATCAAAAGAATGAATTAAAGTGTCCACATTGTCCATTGGTGTTCTCATACAAAAAATCCCTTTTAAAACACATTGAGACACATGCAAATAAATTCACATGTAAAGTTTGTGGTAACGAATTTATGAAACGGGAGCAGTTGTCAAAACATTTAGAAAGTCACATAAGACcaaaatcatttaaatgtaCTCAGTGCAATAAAGTTTTCGGCAATGAACTCACGTTACGTAATCATTTGATAGCGACGAGTCACAAGACAATTCTCCAAGGACAAGAATACGATCCAAATAAAAGATTAAAGCGAGTCGCCGCGAAAGCAGCGCAGAagataattgacaaaattaaaattgaagacGAAAGCGATTATGACGAGGACGCCAAGAAGAAAGACATCAATTATCGTGAAGAAACAAAATCCCCAACAAAGAGAACGtacaataaaaaactttttgaatgCGAaacttgtaataaaaaatgcagTTCAAAGCAGTCGTTGACAAAACACATGGAATTACATGTCAAGgatgaaaaaagtgaaaaggaCAAAATCAAACAAGAGAAAAAGGATCCAGAGAAATTCCTCGAAGACGATGAAGACACTGACGATCGTGACGATGATTTTGAAAGTGGTCTCGATTGGCCAATGGACAATCACGAGTGTCCCACCTGTAAGAAGCGATacagtacaaaaaaatccctcCTCAGGCATCAACTTCTTCATGAGGAGCCAAATTTTGAATGCGACATTTGCAATGtgaaattttatcgaaaagaTAAGCTCAAAGCTCATTATGACAAGTGTTCTGAAAAGAATCCCGATCAAGTCCGAAAGTGCAACATATGCGGTGACAGTTTtgagaataatgaaatattacgTGAGCATCGCGCAAAACACGTGACCGAGGGAATATTAACCGAGGAGGATTTACGTGAAATCGAACCAAGGCCCGAGGAGAGAAAATCAGGTGAAAAAGTTCCCCGAAAGAGACGAACGGATATTGTTGGTCTCGAGTGTACGGAATGTAATAAACAATACACGTCACGAAAGGGTCTTTTGCGACACATTCAAGTGCACGAGGGCAAGAAATACCTGTGCGATATATGTCCAAAGAAATTCTATCGTCGTGAACATTTGAAGATACATGTAGCCAAGCACAATATGATTAAGCCCTACAAGTGTACACGTTGCACGAAACGTTTCATCAAGGAGGAACAATTAACGAATCATCTCTCGAAACACGATCGTAATTTCAAGAAGAATAAAGAGACGGACAGTTCAAAGCGATTCCTGTGTGAAATTTGCTCCAAGAGTTTCACTCAATCGACAACATTGATCGCTCATTTACGCGCTCACAATGGAATCAAACCTTATGTTTGCGAGGTGTGCTCACGACCATTCACAACAAACGCATATTTGAAAATGCACATGCGAACACACACCCAGGAACGACCGTacatttgtcaattttgctCGCGAGCTTTTGCACGCGCCGATACACTCGCCAATCATTTGACATCACACACTGGCGAGGCCAAGTatcattgtaaattttgtccGAAAAATTTCCGACGTCTCAAGTCACTCAAGGAACACGTGTTCATTCACACCGGCCAAAGACCGTACGCGTGTCCCACCTGTGATCGACGATTCAACAATAATGGCAGTCGTTACGCTCACAGTAAACGGTGCAAGCAAAATATGctccaaaatcaaaatcgtgCTCAACTTGTTTCTCAAGTGCCACAACAACAAGCTTTGCAGATACAACAACatcagcagcagcagcagcaacaacaacaacagcagcagcaacaacatcaacaacaacaacaacaacagcaaaAGATTCACCAAACTATTGTTCAAAGTCCGTTGATCAAGTCACAGAATATTAAGACAATCACAATTGCGAGACAAGCGGAACCAATGACAGCTCAACATGTTATGCAGCATCAGGAAATTCTCATGCCTCTCATTTTGCCATTGACAGTGACTCTTGCCGATGTTGGAGAAGAAGTCATCCTGCCGGAAGGTACGAAAATATTCACCACGTCTTAA
- Protein Sequence
- MDAVEINTSESPQNEEGIVSAMEICRVCLLGNLLMRDLFHDNGVASLSAKAMSFTNIKMLPGDGLPGQVCCDCADKLEAAYDFKLQVEQADNVLREKFDTLNIKEELFFNDVEVHLEGERTRVRREINDNGEYVEATESLHDDGRDTLLKDHLALLQVEKIAEQESMLQHDFCSGVEHLQEQLQEELHEDELEEEEELPEEEQLQEQHLQEEHLQEQHLQEQHLQEHHLQEHHLQEHHLQEHHLQEHHLQEQQMQEEHLHEEHLQEEHLQEQLQDDDLTDDLDKQPNDELLQLQQISQSVHNFSDQQRGIKDENLQDVESENIPEQNYLDHQECSQMSDDDFNNDEPFADTQESMEYSSLEKEREMEQDQDQEHSPMDDSVEQMEHELPQNETRRSKRKVIRRSTGSEHNSDEENYFENLNLSSRLKKTQDDKSEKVFFMCYLCDKEFLSKGILKEHMHSHEEVRRTLSLKKVDNKTQKVTVVQQKPMPSQKIPVTPQKSSLLPLKTPPSGKKANKCPYCGKEYLYIISFNKHIKQHEKEKDVKKSEFMSTGDSFHEDDDSIDYVENVNSISALETSVEDINDSESENDKESEIYQCEKCPEKFSNKRALQKHGVKHINLKCSVCDVEYESLEKLSEHRIEHVTEGVLTEEDLRKDAEEWNVIDDKDEMDQKNELKCPHCPLVFSYKKSLLKHIETHANKFTCKVCGNEFMKREQLSKHLESHIRPKSFKCTQCNKVFGNELTLRNHLIATSHKTILQGQEYDPNKRLKRVAAKAAQKIIDKIKIEDESDYDEDAKKKDINYREETKSPTKRTYNKKLFECETCNKKCSSKQSLTKHMELHVKDEKSEKDKIKQEKKDPEKFLEDDEDTDDRDDDFESGLDWPMDNHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKSGEKVPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQNRAQLVSQVPQQQALQIQQHQQQQQQQQQQQQQQHQQQQQQQQKIHQTIVQSPLIKSQNIKTITIARQAEPMTAQHVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883235;
- 90% Identity
- -
- 80% Identity
- -