Lcla000260.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- Rfx2
- Assembly
- GCA_001855655.1
- Location
- JUFY01030917.1:1200-3418[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-37 8.7e-33 113.3 0.1 5 78 1 74 1 75 0.98 2 2 1.5 2e+04 -3.2 0.0 42 55 422 437 412 447 0.69
Sequence Information
- Coding Sequence
- GTACAGTggttattagaaaattatgagACTTCAGACGGAGTCTCTCTTCCAAGATCAACGCTTTACAATCACTACCTTCGCCATTGCTCGGATAATAAATTGGATCCTGTGAATGCAGCGAGCTTTGGGAAATTAATTCGTTCAGTATTTTTAGGTTTAAGGACGCGACGTTTAGGAACACGAGGAAACTCCAAGTACCATTACTATGGTATTCGTGTGAAGCCCAATTCGCCATTGATTTTGTTGAATGAAGACGGAACTTCTCGACAACAAACAACTTCAAATTCTCAGGCAAAGAGATTCAAGTTTGTGAATCAGAAGCAAGATCCAGCCTATGATGCCAATGCACACTCCAATACAAACATTTCTTCTCACAACTCTCCGCCCCAGTATCAGCAGTATCTCGGAGAAGGGGGTAACGCAATTCCAGAATTTCCGGAAATTATAGTGGGGCACGGGTCGTCTCTACCGGAAGATTGCACTTTAGAAGACATCGACACATTCCGCAGTATTTATAGAGAGCACTGTGAGGCCTTTCTAGACGccgttttgaattttgagTTTGCTACAATTGAAAGTTTGTGGAGGGAATTCTGGCGTAGTCAAGATAATAACAACGGCGATGAgtgtgaagaagaaaaatatttatcaaagaCTAAACTCTACCAGATGTGCAAGTGCTCCGAAGTGCAAGATTTCATCAGACAAGTGGATTACAACTTTTATCAAAACTTGGTCGAAGTTCTCATGCCTGATGTTTTACGACCTATTCCTaGTTCATTAACCCAGTCTATAAGAAACTTTGCCAAAGGTCTCGAATCGTGGCTGACGTCAGCAATGAATGATTGTCCTCAAGAAATGATGCACATAAAGTTGACAGCTGTATCTGCGTTTGCGCAAACATTGAGGAGATACACTTCTTTGAATCATTTAGCTCAAGCCGCGCGAGCCGTACTTCAAAACACTAGTCAAATTAATCAAATGTTAACAGATTTAAATCGAGTAGATTTTCACAATGTTCAAGAGCAGGCATCATGGGTTTGTCAATGTGACTATACAGTTGTTCAACGTTTAGAAACTGATTTCAAAGTCACACTTCAACAACAAAATTCGTTGGAACAATGGGCAGTGTGGCTGAAAGGAGTGGTAACTCAAGTTCTTAAACCTTACGAGGGCAAACCAACTTTTGCTAAAGCTGCACGCCAGTTTCTTCTCAAGTGGTCATTTTACAGttCAATGGTTATACGAGATCTGACATTGAGAAGTGCTGCGAGTTTCGGTTCTTTTCACCTCATTCGCTTGCTGTATGATGAgtacatgttttttttaattgaacatCAGGTTGCTGTAGCTACAGGAACAACTCCCATTGCCGTGATGGGTGACGTgagtattttttatgaaatattgtaCTAG
- Protein Sequence
- VQWLLENYETSDGVSLPRSTLYNHYLRHCSDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPNSPLILLNEDGTSRQQTTSNSQAKRFKFVNQKQDPAYDANAHSNTNISSHNSPPQYQQYLGEGGNAIPEFPEIIVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATIESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCSEVQDFIRQVDYNFYQNLVEVLMPDVLRPIPSSLTQSIRNFAKGLESWLTSAMNDCPQEMMHIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLTDLNRVDFHNVQEQASWVCQCDYTVVQRLETDFKVTLQQQNSLEQWAVWLKGVVTQVLKPYEGKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFFLIEHQVAVATGTTPIAVMGDVSIFYEILY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873559; iTF_00691671;
- 90% Identity
- -
- 80% Identity
- -