Lbou015972.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000010.1:625879-633111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.24 25 6.0 1.8 1 23 436 458 436 458 0.97 2 19 0.03 3.2 8.8 0.6 2 23 511 532 510 532 0.95 3 19 0.00038 0.041 14.8 3.2 1 23 591 613 591 613 0.95 4 19 0.09 9.7 7.3 0.1 2 23 617 638 616 638 0.95 5 19 7.5e-05 0.008 17.0 1.5 2 23 672 693 671 693 0.97 6 19 0.0058 0.63 11.0 0.5 1 23 697 719 697 719 0.97 7 19 0.00069 0.074 13.9 0.5 1 21 725 745 725 749 0.92 8 19 6.7e-05 0.0072 17.1 4.1 1 23 812 834 812 834 0.97 9 19 4.2e-05 0.0045 17.8 3.8 1 23 879 901 879 901 0.97 10 19 0.00029 0.031 15.1 0.7 1 20 906 925 906 927 0.94 11 19 0.049 5.2 8.1 0.3 2 23 938 959 938 959 0.97 12 19 3e-05 0.0032 18.3 0.6 2 23 998 1019 997 1019 0.97 13 19 2.7e-05 0.0029 18.4 1.6 1 23 1024 1046 1024 1046 0.95 14 19 0.00015 0.016 16.0 2.9 1 23 1052 1074 1052 1074 0.98 15 19 4.8e-06 0.00051 20.7 0.4 1 23 1090 1112 1090 1112 0.95 16 19 3.9e-07 4.2e-05 24.2 0.6 1 23 1118 1140 1118 1140 0.99 17 19 0.00019 0.021 15.7 0.2 1 23 1146 1168 1146 1168 0.97 18 19 0.00079 0.085 13.8 4.2 1 23 1174 1196 1174 1196 0.96 19 19 0.011 1.2 10.2 0.4 1 20 1202 1221 1202 1223 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAAATAAATACGTCGGAATCACCGCAAAATGAAGAGGGAATTGTATCTACAATGGAAATATGTAGAGTTTGTCTActtggaaatttattaatgcGCGATCTTTTCCACGATAATGGGGTCGCATCTTTGTCCTCTAAGGCCATGAGTTTTACCAACATTAAGatgtTACCTGGTGATGGACTACCAGGACAAGTTTGTTGTGATTGTGCTGATAAGTTGGAAGTTGcctatgattttaaattacaagtaGAGCAAGCTGATAGTGtattgagagaaaaatatgatactttaaacataaaagaagagttattttttaatgacgtGGAAGTACATTTAGAAGGAGAGAGAACGCGTGTAAGACgtgaaattaatgataatggtGAATATGTCGAGGCAACAGAATCATTACACGACGATGGAAGAGATACACTTTTAAAGGATCATCTTGCACTTTtacaagttgaaaaaattgccGAACAAGAGAGCATATTACAGCAcgatttttgttcAGGTGTAGAGCATTTGCAAGAACAACTTCAGGAAGAATTAAACGAGGGTGAATTAGAGGAAGAGGATTTGCCGGAGGAGGAGCAATTGCAGGAGGAACATTTACAAGAGGAACATTTACAGGAACAACATTTACAGGAACAACATTTACAGGAACAACATTTACAAGAACATCATTTACAGGAACATCATTTACAGGAACATCATCTACAAGAACATCAATTACAAGAACATCAATTACAAGAACATTTACAAGATCAACAAATACAAGAGGAAAATCTTCAGGAAGAACATTTGCAAGAGGAACATTTACAAGAGCAATTacaagatgatgatgatgatttagCTGATGATCTTGCTAAACAATCAAATGAAGAATTACTCCAATTACAAGAAATTTCCCAACCTATGCACAATTTTTCGGATGAAAAACGTGGTATTAAGCATGAAAATCTTCAGGACAGTAATATTTCCGAACAAAATTATCTTGATCAACAGGAATGCTCACAAATAAGTGatgatgattttaataatgacGAGCCATTCGTCGATTCACAAGAGTCAATGGAATATTCAACAttggaaaaagaaagagaaataacTGAACAAGATGCCGAACAAATGGAATATGATTCACCACAAAATGAAACAAGACGAAGTAAACGTAAATTAACACGTCAATCAACTGAATCAGATCATAATTCAGATGAggagaattattttgaaaatttaaatttaagttcacgtttaaaaaaaacacaggaGGATAAATCGGAGAAAGTTTTCTTTATGTGTTATCTTTGTGACaaggaatttttatcaaagggAATTTTAAAGGAACACATGCATTCACACGAGGAGGTGAGAAGAACtttatcattgaaaaaaattgacaataaatcGCCAAAAACAATTGTCCAACAAAAATCATTGTCTATACAAAAAGTTCCTGTAACACCACAAAAAACCCCGGTACCATTAAAAATGCCACCATCTGGTAAAAAGGCAAATAAATGTCCCTATTGCGGTAAAGAATATCtctatattatttctttcaataaacatttaaaacaaCATGAAAAAGAGAAAGGTGTCAAGAAACGTGAATTTATGACATCGACAGAAGATAATTTCCCTGACGATGATGATTCTGTTGATTATATCGAAAATGTAAATTCCattcataattttgaaacaagcGTCGAAGATGTTAACGATTCCGAATCGGATAATGATAAAGAATCAGAAATTTATCAATGTGACAAGTGTCCCGAGAAATTCAACAATAAACGATCACTTCACAAACATGGTGTTAAACATATAAATCTAAAATGTTCAGTCTGTGACGTAGAATACGAatcattggaaaaattaagcgAACATCGAATTGAACATGTCACCGAAGGTGTTTTAACTGAGGAAGATTTACGTAAAGACGCCGAGGAATGGAATATAATTGATGACAAAGATGAAATGGATCAAAagaatgaattaaaatgtCCCCATTgtccattattattttcatataaaaaatccCTATTAAAACATATTGAAACACatggaattaaatttacatgtaaaatttgtggcaatgaatttttaaaacgtgaACAATTAGCAAAACATTTGGAAAATCATGTAAGaccaaaatcatttaaatgtaCACAATGTAACAAAGTTTTTGGCAATGAATTAACATTACGTAATCATTTAATAGCAACAAATCACAAGACAATTCTTCAAGGACAAGAATATGATccaaataaaagattaaaacgACACGCGGCAAAAGCagcacaaaaaataattgataaaataaaaattgaagacgAAAGCGATTACGATGAGGAGGGTAAAAAGAAAGATCACGATGAATTAAAATCACCAAAGagaatgtataataaaaaacttcTCTTCGAATGTGAGAcgtgtaataaaaaatgtagttcGAAACAATCATTAACAAAACATATGGAATTACATGTGAaagatgagaaaaatgataaaattaaacttgagaaaaaagaaacagaaaaattccTCGACGATGACGATGATGATACAGATGATCGTGATGATGATTTTGAAAGTGGTCTCGATTGGCCAATGGATAATCATGAATGTCCGACATGTAAAAAACGATACAGTACAAAAAAATCCCTCCTTAGGCATCAATTACTTCATGAGGAGCCAAATTTTGAATGTGACATTTgtaatgtgaaattttatcGTAAAGACAAATTGAAAGCTCATTATGACAAATGTTCAGAGAAAAATCCCGATCAAGTACGTAAATGTAATATATGTGGtgatagttttgaaaataatgaaatattacgTGAACATCGTGCAAAACATGTGACAGAGGGAATTCTAACCGAAGAGGATCTACGTGAAATTGAACCAAGGCCCGAGGAGAGAAAATCAGGTGAAAAAATACCACGCAAACGTCGTACCGATATTGTTGGTCTCGAATGTACCGAatgtaataaacaatatacATCACGTAAAGGCCTCCTACGACATATTCAAGTTCATGAGGGTAAAAAATATCTCTGCGACATTTGTCCAAAGAAATTCTATCGACGTGAACATTTAAAGATACACGTTGCCAAACACAATATGATTAAACCCTACAAGTGTACACGTTGTACAAAACGTTTTATTAAAGAAGAACAATTAACAAATCATCTTTCAAAACATGAtcgtaatttcaaaaagaataaagaaacaGATAGTTCAAAACGTTTTCTTTGTGAAATTTGCTCGAAAAGTTTTACTCAATCAACAACATTAATCGCTCATTTACGTGCACACAATGGAATTAAACCATATGTATGCGAAGTTTGCTCTCGTCCATTCACAACAAATGCCTATCTTAAAATGCATATGCGAACACACACTCAAGAACGACCttatatttgtcaattttgttCGCGTGCATTTGCACGTGCCGATACACTCGCAAATCATTTAACATCACACACTGGCGAGGCGAAATatcattgtaaattttgtccGAAAAATTTCCGACGACTCAAATCACTCAAGGAACATGTTTTCATTCACACTGGTCAAAGGCCATATGCATGTCCAACTTGTGATCGAAGATTCAATAATAATGGTAGTCGCTATGCGCACAGTAAACGTTGCAAGCAAAATATgttacaaaatcaaaatcgtGCTCAACTTGTTGCACAACAAGTGCCACAATCAACATTACAGATACAACAgcaacagcagcagcagcatcaacaacaacagcagcaGCAACATCATCAACAGCAGCAACAACagcaaaaaattcatcaaactATTGTTCAAAGTCCATTGATAAAATCGCAGAATATTAAGACAATCACAATTGCAAGACAAGCGGAACCAATGACTGCTCAACATGTTATGCAACATCAGGAAATTCTCATGCCACTTATTTTGCCATTGACAGTAACACTTGCCGATGTTGGAGAGGAAGTAATATTGCCCGAAGGTACGAAAATATTCACAACttcttaa
- Protein Sequence
- MDAVEINTSESPQNEEGIVSTMEICRVCLLGNLLMRDLFHDNGVASLSSKAMSFTNIKMLPGDGLPGQVCCDCADKLEVAYDFKLQVEQADSVLREKYDTLNIKEELFFNDVEVHLEGERTRVRREINDNGEYVEATESLHDDGRDTLLKDHLALLQVEKIAEQESILQHDFCSGVEHLQEQLQEELNEGELEEEDLPEEEQLQEEHLQEEHLQEQHLQEQHLQEQHLQEHHLQEHHLQEHHLQEHQLQEHQLQEHLQDQQIQEENLQEEHLQEEHLQEQLQDDDDDLADDLAKQSNEELLQLQEISQPMHNFSDEKRGIKHENLQDSNISEQNYLDQQECSQISDDDFNNDEPFVDSQESMEYSTLEKEREITEQDAEQMEYDSPQNETRRSKRKLTRQSTESDHNSDEENYFENLNLSSRLKKTQEDKSEKVFFMCYLCDKEFLSKGILKEHMHSHEEVRRTLSLKKIDNKSPKTIVQQKSLSIQKVPVTPQKTPVPLKMPPSGKKANKCPYCGKEYLYIISFNKHLKQHEKEKGVKKREFMTSTEDNFPDDDDSVDYIENVNSIHNFETSVEDVNDSESDNDKESEIYQCDKCPEKFNNKRSLHKHGVKHINLKCSVCDVEYESLEKLSEHRIEHVTEGVLTEEDLRKDAEEWNIIDDKDEMDQKNELKCPHCPLLFSYKKSLLKHIETHGIKFTCKICGNEFLKREQLAKHLENHVRPKSFKCTQCNKVFGNELTLRNHLIATNHKTILQGQEYDPNKRLKRHAAKAAQKIIDKIKIEDESDYDEEGKKKDHDELKSPKRMYNKKLLFECETCNKKCSSKQSLTKHMELHVKDEKNDKIKLEKKETEKFLDDDDDDTDDRDDDFESGLDWPMDNHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKSGEKIPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQNRAQLVAQQVPQSTLQIQQQQQQQHQQQQQQQHHQQQQQQQKIHQTIVQSPLIKSQNIKTITIARQAEPMTAQHVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883235;
- 90% Identity
- -
- 80% Identity
- -