Lari004651.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- zfy1
- Assembly
- GCA_951799465.1
- Location
- OX637266.1:128685-133318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 1.6e+02 3.1 0.3 2 23 6 27 5 27 0.95 2 13 0.013 0.84 10.3 0.6 1 19 1029 1047 1029 1047 0.97 3 13 4.6e-05 0.0029 18.0 1.1 2 23 1139 1160 1138 1160 0.97 4 13 2.2e-05 0.0014 19.0 0.6 1 23 1166 1188 1166 1188 0.99 5 13 0.0054 0.34 11.5 5.6 2 23 1195 1216 1194 1217 0.95 6 13 0.21 13 6.5 1.0 6 23 1231 1248 1229 1248 0.97 7 13 0.008 0.5 11.0 3.4 3 23 1255 1276 1254 1277 0.96 8 13 0.075 4.7 8.0 0.2 3 23 1292 1311 1291 1311 0.96 9 13 0.00012 0.0076 16.7 0.4 1 20 1317 1336 1317 1339 0.91 10 13 0.015 0.92 10.2 1.5 1 23 1347 1369 1347 1369 0.97 11 13 0.00095 0.059 13.9 7.3 1 23 1375 1397 1375 1397 0.98 12 13 2.2e-06 0.00014 22.2 1.0 1 23 1403 1427 1403 1427 0.95 13 13 0.0028 0.18 12.4 4.3 1 23 1433 1455 1433 1456 0.95
Sequence Information
- Coding Sequence
- ATGGATGAGAGAGTTCAGTGCCCAGTTTGTACGCTATATCTCCACAATGGGATGTCACTGGAGACGCATTTGGATACACATCCTAAAGATCAAGTTATTAAAGCTCTATGTAGTTTATcttcaaaaaatattcctGGTGGCAGCAGAACCCCCACACCATCATTGTCGGAACGTTCTTATAGATGTAGGACAccggtgacagatgacagcgtCAGATGGTCGACGTCACGCCGCAGTGCTGAAAGCACTTATTGGAGAAGGACACCAAGCAGAAACAAATCGTCGTCATCATGTAATTCCAGAAATGACACCCCAGAAGTCCGATTGAATGTTGTTAACTTTGATAGCAATGCTGTCAACCATTGTTCTGAATATTCTGATTGTTCAGTAAAATCTTCTAAGACATCCCAGTCATTTCTGCCGAGTGTGCCAACTGTACAATCAAACTTCAATCAGCAATACCCATTCTACAGTGAGCCTACAGAAGAGGCAGAAGTAAAGTATTCCCGCAGCTCAGATTACAATGGGACTGAAAATACAAATCagctttttgtttataatgttCCAGTACTGACATCAAATGTAAAAGTTCCAGCTTCTCCGACATTACCATCACCTTCAACGTCCAAAAAGCCgacaaattatgtaaaaattcttccaaaacaaaacatggtCTTAAAAAATGCCAATAGACTAGGATACATTGCCTCAGGGGTCAAGCCATATCCCGTCATGATGTCCACATCTCCAACTTTTGTGCAGAAAAATGTTCAAACTAACATGATGGTGGCTGGAAGTGTGCCTGTCTCTGGAATATTGGACACTAAAACGGCTGTTGCTCCATTGACCAGTCAATTCAGTCAACTGAATCCGGGCAATTTAACCAGTGGCACTACTGTGGTTACTCAAAattcacaaattatttatcgTGAAATGGTGCATAGCATTGATGGGAAGCCTTTCATTTCAAACATACCACATGTTCTCAACACACAAGAAAATATGGGGCAGAACAGCTCCATGTATCAGAATCTTATGGTGGTTGACCCCTTCGGTAACACTTCGTGTATGTATAGTACTCCTCAAACCATTTTACCCAAGACGTGCAATCCTCCGATATTCAGCAATAATTTATCACATATGCCAGCTTCCATAGACAAGTCTATAcctaatattgtaaatgacGTTAGCAAAACATTGATAATGGAGGTCAGCCCAATTCAGCATCAGATTACATCCAAAAGTGAGATGATTTCCATGCAAGAAGTCGATGAACCCACGGCAAGCAGCTGTTCTTCAGGTCAGACCCACAGTGATCCTGTTCAGAGAACATCAGAAACGGATCCTGATTCTAAAAACTGTTCTACAAAAGGCTTAAAAATTCTGAGCAACATTAAGGTGGAAGTTCCCGTACAGCACAATAAGAACATGATCAACACTATAATGGATCTAACTGGTCCTGGAGAATCCGGATACATTCAACGTCCGCAGTCACCTGAGAATATTTTGCCAGACTTAAAGGAGAGAACTCAGCATAGATCTGAGGGCACACAGCTGACTCACAGCCAGCCCACGAATGAGAGTAATTCCGAATTGGCTTCTCATAGCTTctcagttataaaaaatattggaaatCCCCAGTGTTCTAAGGACTTTTCAAAGTTGAATTGTGGCCAGGAAGACAATGAATCGTGTGATAGCAATCCTGTTCCTGACCTTATATGTAATGAAAAACCATCAATATCACCCTGCAGCGACATATTAGACAACTCCATGGACCAGTGTCCGCCTCTCTCTAAAAACGATCACTGTCAAGAACCCAACAAAGAAATCATCGCTGGCTGCGATCAGAGACTGAGGAGAGATCAGTTGCAGCAAATGTCACCTAAGAGTGAAGTACCATCCAACGAGGCACATTTAGAACGGGACGATTCCAAATCCACAACAACATTCCCAGTCCAAACCTTGAAAAATATAGTTGTTCAAAATGAGGATTATTCAACAAATGGAAACCTTTTAAAGCATAAGAGCCATCCTCTGAGGCTGAACAACATATTAGTgaagaaacataaaaaactaacaataaagaattttaaGCCAATGAGAGCCGAGGCAGATCCCCAACCTTCGTCATCTGCGACGAAAACGGAAACTTACTTTAACCTCACCGTTGAGAAGGTAGAAAAGCACGAGGAGGACATTCAGGCCGAATCTTGTGTTGAGAAAATGGAGGTCTTAGAAAATGAAAAAGATTTCGATGCCGATACAGAGGAGCAATCCATGGACATTGAGCCCACCGCACCTTCAATGATTAGCCACTCCAGTGCCTATTCCACCTCCATTAACTTGGTGATCAAGGAGGAGGTGAGTTCCAACAATGAGTTCAGCAACGAAGCCGACAGGTCCAGTCGCGACCTGCCCACTCTCGAGTCCTTGCGTCCGATTAACGTCATCACCTACGGCAACATGGGCGCCGCAGACTTTGACGACGACTCCAACCACAGGGAGCTTCTGGACCTGGAGACGGCGTCGAAGAACAAGCAATTCGTGAATATGATGAACGACAACTATTTCGGTGACAACATTTATGCCGACTACTTCACACCCGACCGCGTCGAGAGTTTCGACTCGGAGAAGGGCTCCAAGGTGGTCAGGGAGAGGGAGGCCTACAGCATTTGGGGGGAACCATCGCAGAAGGAGACCGAGTTCGTCTTGCCCAATTTCATTCACGAGAGTTATAAAATCGCCGAGAGCAACATGGAATATGACATTGGGGAAAACCAGACCATAGATCACAGAGGTCACACCGAACGGGATAGTAAGGCGGACGTTTTACAAGAGACCAGGGAAGAGGAACCGCCTCTGAACATTTGCGCAGACGAGCGGATGCCCCCCCGAGGAGAGCTCAGCGGCCAGGAGAGCAACGGCGACATGGACTCGTCGTGGAGTGGGATGTATCCTGAGGTGACGGCGGGGGAGCCCTACGACTTGATGGCCCGCGAGAGCTGGGTCTCTGACGGCTCCGACGTCGACGACAACCAGAAGTCGGACAACTTGGAGGAGCCGCTGGCCAAGCCGCGCCTGCACACGTGCGGCCAGTGCGGCCTCAAGTTCCCCACGCTCAAGGAGCTGCGCTCGCACTGCGACGCCTCCTACTCGCACAGCCGCGTGCCCCGCTGCATCAAGAAGGAGGAGAAGCCCGACGTGCCCTCCCTGGCCGAGACGCTCATATTCGAGAGCAAAGACGCGGTGACCACCTCGATGCTGCCGGACTTCGACCCCCTGGCCGAGGCCAAGCCGGAGCTGATCCTGATCAAACAGAAGAAGAAGCGCAACAACTTTGTGTGTTTCACGTGCAACGTGGACCAGGGCAGCCACCAGGCCTTCAACGAGCACCTCAAGGTGCACCCGCTGGAGTGTTACACGTGCGGCAAGTTCTTCTACCGCCGCGCCAACCTGGTGCTGCACACGAAGACGCACCTGGGCATCAAGAACTACGAGTGCGAGGTGTGCGGCAAGCGCTTCGTCACGCGCCAGAAGCTGGGCGAGCACCGCAACACGCACACGGGCCACGCCCCCGTCAAGTGCACGCTGTGCGACTGCAGCTTCCGCCGCTACTCCAACATGGTGCAGCACCGCGACCGCCACCACCTCAAGAAGAAGGCCAAGGTGCGCGACTTTGTGTGCCGCTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCTGTGGCACCAGGAGACGCACGACGAGCGCCCCAAGGCCTGCGCGCACTGCGGAGACAAGTTCGTGCACGCGGCGTCGCTCACGCGCCACGTGCGGCGCTCGCACCACCACTACCACGTGGCGCGGGGCGCGCGCGACGCCAACGTGGCCTGCCCCGTGTGCAAGCAGCTGTACCTGCGCTCCAACCTGCGCGCGCACCTGCTCACGCACAGCGGCGCGCGCCCCTTCGCCTGCGTCGTGTGCGACAAGGCCTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACGCCGGCCGCTCCGCCAAGCCCTACAAGTGCACGCTGTGCAAGGGCGCCTTCTTCCGCCACAGCGAGTTCCTGGCGCACGTGAACGCGCACCGCTCCGTGCGGCCCTACACGTGCAAGCACTGCGGCCGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGACCGCCAAGCGCTACGCCTGCCAGGTGCCCGACTGCGGCAAGACCTTCCACCGCAGCTACTACCTCACGGAGCACATGCGCGTGCACAGCGGCGCGCGCCCCTTCGCCTGCAGCGTCTGCGGCAAGACCTCCACCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGCGAGCCCGTGGCCACGGAGGCCTAG
- Protein Sequence
- MDERVQCPVCTLYLHNGMSLETHLDTHPKDQVIKALCSLSSKNIPGGSRTPTPSLSERSYRCRTPVTDDSVRWSTSRRSAESTYWRRTPSRNKSSSSCNSRNDTPEVRLNVVNFDSNAVNHCSEYSDCSVKSSKTSQSFLPSVPTVQSNFNQQYPFYSEPTEEAEVKYSRSSDYNGTENTNQLFVYNVPVLTSNVKVPASPTLPSPSTSKKPTNYVKILPKQNMVLKNANRLGYIASGVKPYPVMMSTSPTFVQKNVQTNMMVAGSVPVSGILDTKTAVAPLTSQFSQLNPGNLTSGTTVVTQNSQIIYREMVHSIDGKPFISNIPHVLNTQENMGQNSSMYQNLMVVDPFGNTSCMYSTPQTILPKTCNPPIFSNNLSHMPASIDKSIPNIVNDVSKTLIMEVSPIQHQITSKSEMISMQEVDEPTASSCSSGQTHSDPVQRTSETDPDSKNCSTKGLKILSNIKVEVPVQHNKNMINTIMDLTGPGESGYIQRPQSPENILPDLKERTQHRSEGTQLTHSQPTNESNSELASHSFSVIKNIGNPQCSKDFSKLNCGQEDNESCDSNPVPDLICNEKPSISPCSDILDNSMDQCPPLSKNDHCQEPNKEIIAGCDQRLRRDQLQQMSPKSEVPSNEAHLERDDSKSTTTFPVQTLKNIVVQNEDYSTNGNLLKHKSHPLRLNNILVKKHKKLTIKNFKPMRAEADPQPSSSATKTETYFNLTVEKVEKHEEDIQAESCVEKMEVLENEKDFDADTEEQSMDIEPTAPSMISHSSAYSTSINLVIKEEVSSNNEFSNEADRSSRDLPTLESLRPINVITYGNMGAADFDDDSNHRELLDLETASKNKQFVNMMNDNYFGDNIYADYFTPDRVESFDSEKGSKVVREREAYSIWGEPSQKETEFVLPNFIHESYKIAESNMEYDIGENQTIDHRGHTERDSKADVLQETREEEPPLNICADERMPPRGELSGQESNGDMDSSWSGMYPEVTAGEPYDLMARESWVSDGSDVDDNQKSDNLEEPLAKPRLHTCGQCGLKFPTLKELRSHCDASYSHSRVPRCIKKEEKPDVPSLAETLIFESKDAVTTSMLPDFDPLAEAKPELILIKQKKKRNNFVCFTCNVDQGSHQAFNEHLKVHPLECYTCGKFFYRRANLVLHTKTHLGIKNYECEVCGKRFVTRQKLGEHRNTHTGHAPVKCTLCDCSFRRYSNMVQHRDRHHLKKKAKVRDFVCRCGAVFHSRAKLLWHQETHDERPKACAHCGDKFVHAASLTRHVRRSHHHYHVARGARDANVACPVCKQLYLRSNLRAHLLTHSGARPFACVVCDKAFTTKWNLKLHRWTHAGRSAKPYKCTLCKGAFFRHSEFLAHVNAHRSVRPYTCKHCGRQFIRKYNCQRHVREHETAKRYACQVPDCGKTFHRSYYLTEHMRVHSGARPFACSVCGKTSTNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204282;
- 90% Identity
- -
- 80% Identity
- -