Labn005956.2
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001441.1:5894-8715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.7 1e+03 1.8 1.0 2 22 119 138 118 142 0.88 2 14 0.0025 0.44 12.4 3.5 1 20 144 163 144 166 0.94 3 14 0.00074 0.13 14.0 0.4 1 23 172 195 172 195 0.90 4 14 6.5e-06 0.0011 20.5 0.9 1 23 201 223 201 223 0.98 5 14 1.6e-06 0.00028 22.5 1.9 1 23 341 363 341 363 0.98 6 14 0.00069 0.12 14.1 0.2 2 21 370 389 369 390 0.93 7 14 0.00032 0.056 15.2 3.4 1 20 411 430 411 433 0.93 8 14 0.0024 0.42 12.5 0.5 1 23 438 461 438 461 0.95 9 14 2e-06 0.00035 22.1 0.3 1 23 467 489 467 489 0.98 10 14 0.0023 0.41 12.5 6.3 1 23 496 518 496 518 0.98 11 14 4e-05 0.0071 18.0 0.6 3 23 526 546 524 546 0.97 12 14 0.00045 0.08 14.7 0.2 1 23 552 575 552 575 0.96 13 14 0.12 22 7.1 0.3 1 23 589 611 589 611 0.96 14 14 0.018 3.1 9.7 0.0 2 23 866 887 865 887 0.96
Sequence Information
- Coding Sequence
- ATGATGGAAACGAATGAGAATGAACAGTATGTTACCTTTACGCTGGATGGTATGCACGAaggTATTCAGAATAATGTCTCACACGAAGAAATATGTGAGCCTGTAGATGAGTGCATTCTGGAGGCTGAAGAAATAACCGAGGTCACAGTTGATGAAATTCATGAGGATATCACAGAGACAGAAATGGCTGTAGAGATTATTACAGGAAATTGTGAAGAAGGTGAGGAACAAAGTgctgtaatttatataaaaaaagagggttCACCGCAGTTTACCTCAGGAGATGATTTAATGGCTGTAGAAGCTCTACGTCAACTTGGAGGAATGTATCCcagctttgaaaataaaaaagttacttgTGCCACGTGTAACAATACATTTGCAGCTAATGATTTGGCTAAACATCAAACTACTTGTACGTCTCATAAACATTTTTGCAGCACCTGTGGTGAaaagtttgaaagaaaaatagatttgAACAATCACATGGTTTGCCATCAGGTTGATAGGCCGCATGCCTGTCGAACTTGTGGAAACTTATTCAGATCTAAAGCTAATCTTCAAGCACACATGGTTGAAGTGCATCAAGTTGAGAGACCACACAAGTGTACAGTTTGTGGAGCGGATTTCCAAAGGCCATCTAGCTTATCCAACCATATGAAAATTCACAGTTATGTTGCAGGTAGAGCACTTACAAGAGGTCAGTCCAATCCTATGATTTCAAATATTGGAAGTTTGAAAGAAATGCCTGAGTCAGAAGATGGTTCAGTATTGGCTACTGTTCAGACTATAGAAAATTTTGAGATACCACAAGTACAGTGGGCAGTACAAATTTCTTCAGATCAAGATGATATTGATGATCAATCTGATAAAATTAACACATTGCAAGAATTTACGGTATTGCCGAATGGAGAAGTTGCTCAGTTTACAGAATACACAACTGAAAATGCAgTGGAAACTGCTAGTTTTGGAGATGGCAAAAGAACTTATATTGAGGTAGATTTacaagaaaatacaaaatttacttgTCATCATTGTGGCGTCAGTTTTGCACGCCCAGGTTCCTTAATTCAACATGAAAAAACGCATGCAAAACCTTCGCCAGTTGAATGTGAATATTGTGATAAACAATTTAAAGACGCTAATTTTTTAGCCACTCATCAAACTTCTTGTAcaaagaaattaatgaaaagtGTAGAAGCAAATACAACTAATCCAAAATGGGGAAAACATTCATGTTCGGAGTGCGGTAAAAAGTTcactacaaaacaaaaaatgtttagacaTCAGTggatacatagaaaaaaaacgcACTCTTGCGAGATCTGCGGTTCTCAATTCGAAAAACAATCCGAGCTTGACGAGCATAGATTATCGGCTCATCCAGGAGACTCTCCTTTTACTTGTCAAGAATGTGGAAAAAGTTTTGTATCTCGGCAGGGACTGTGGGAACATGGGAGAACTCACGCGGGCAGTCCTGCATATTTTCATTGTGACACATGCTCTAAAACCTTTTCTTCTAGGCAAGGATATTTAATACATCATCGAACTCATACAGGAGAACGTCCGTATGGCTGTAAATATTGTTGGAAATCTTTCAGAGATGGAGGTACATTAAGGAAGCACGAAAGAATACATACCGGAGAAAGACCGCACGTTTGTCCCTTATGTTCAAGAGCATTCAATCAAAAAGTTGTTTTGCGTGAACACGTCCGATGGGTTCACGCTGCGGGTAAAAATGACACCGAAGCCACAGGACCACCATTCCCATGTCCTTTGTGTAATAATTTATCGCAAGATCGAGATGAACTGTGTGCTCACATCGTTAAGCATTCTGATCAATTGATAGCGGAAACCAAAGCCAAAACGAACAATTCAACAGTTAAAGTTAAACCACCaccaaaaagaaaaggaaaatcatCGGAAGCTAAAGTGAAAGTTGTACGACGAAAAACACCTACTAAAGGACGGGTAATTACTGCAGAAGAACAAAATGAAGCTCTTCTTTCTATTACAGAGCACTTGGATCCTAATGCAGAGCCACAAGATACTTACCTTATTGTTAAAAACGAATACAATGATGCAATGTGTATTAAAGCCTATGCAAAACTTAGTGATGTCACACAGACTGATGAAAGTGGATCCATTAATCTGATTGCATTTGCAAAGCCCgaaatccaaaaaaaagaaaaagatgataatgatgctgatgctgacgatgatgatgatgatgatgagaataACGTTGATACTGTACATTTAATACCATTTAATACTGCTTCAGGCGAAACAGTTTATATTTCTACAGATAAACAAAATAACACTTTACATcttatatcaaaacaaaatgaaaattcacCTGTTTTAGCTATTCCTAATCTTGAATCGGATGACAATTTCACAAATGATATAGCACAAATACATAATTCAGAAACTGACATTGAAATGACTATTAGAGGTTCTCCAGATCACGaggaaaattgtgaaaatattGGTACAGAGACTGTTGCAATAGAATCTGTCACTATTAAAGAAGAGTATTTTGAAAATACAGTAAATGCAAGTGATAAtagtgaaaatgaaaatgaggaATTAATATGTGGCATATGTGGGAAtgattttgataacaaaaatgtTCTGATGGAACATGTAAAGattcatatataa
- Protein Sequence
- MMETNENEQYVTFTLDGMHEGIQNNVSHEEICEPVDECILEAEEITEVTVDEIHEDITETEMAVEIITGNCEEGEEQSAVIYIKKEGSPQFTSGDDLMAVEALRQLGGMYPSFENKKVTCATCNNTFAANDLAKHQTTCTSHKHFCSTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKANLQAHMVEVHQVERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALTRGQSNPMISNIGSLKEMPESEDGSVLATVQTIENFEIPQVQWAVQISSDQDDIDDQSDKINTLQEFTVLPNGEVAQFTEYTTENAVETASFGDGKRTYIEVDLQENTKFTCHHCGVSFARPGSLIQHEKTHAKPSPVECEYCDKQFKDANFLATHQTSCTKKLMKSVEANTTNPKWGKHSCSECGKKFTTKQKMFRHQWIHRKKTHSCEICGSQFEKQSELDEHRLSAHPGDSPFTCQECGKSFVSRQGLWEHGRTHAGSPAYFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKYCWKSFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDTEATGPPFPCPLCNNLSQDRDELCAHIVKHSDQLIAETKAKTNNSTVKVKPPPKRKGKSSEAKVKVVRRKTPTKGRVITAEEQNEALLSITEHLDPNAEPQDTYLIVKNEYNDAMCIKAYAKLSDVTQTDESGSINLIAFAKPEIQKKEKDDNDADADDDDDDDENNVDTVHLIPFNTASGETVYISTDKQNNTLHLISKQNENSPVLAIPNLESDDNFTNDIAQIHNSETDIEMTIRGSPDHEENCENIGTETVAIESVTIKEEYFENTVNASDNSENENEELICGICGNDFDNKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073938;
- 90% Identity
- -
- 80% Identity
- -