Apse008297.2
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010001397.1:3972-6807[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0027 0.39 12.2 3.2 1 20 147 166 147 169 0.95 2 13 0.00084 0.12 13.7 0.9 1 23 175 198 175 198 0.92 3 13 5.9e-06 0.00086 20.5 0.9 1 23 204 226 204 226 0.98 4 13 6e-06 0.00086 20.5 0.1 1 23 347 369 347 369 0.98 5 13 0.0029 0.42 12.1 0.3 2 21 376 395 375 396 0.93 6 13 0.00031 0.045 15.1 2.6 1 20 417 436 417 439 0.92 7 13 0.00051 0.073 14.4 0.5 1 23 444 467 444 467 0.95 8 13 1.8e-06 0.00026 22.1 0.3 1 23 473 495 473 495 0.98 9 13 0.0021 0.31 12.5 6.3 1 23 502 524 502 524 0.98 10 13 3.7e-05 0.0053 18.0 0.6 3 23 532 552 530 552 0.97 11 13 0.00026 0.037 15.4 0.3 1 23 558 581 558 581 0.96 12 13 0.0029 0.41 12.1 0.2 1 23 595 617 595 617 0.97 13 13 0.2 29 6.3 0.0 2 23 864 885 863 885 0.95
Sequence Information
- Coding Sequence
- ATGATGGAGACGAACGAGAGCGAGCAGTACGTCGCCTTCACCTTGGACGCCATGCACGAAGGCATACAAAACAACGTGTCCCACGAGGAGATATGCGAGCCGGTCGACGAATGCGTCCTCCAAGAGGAGGACATTACCGAGGTCACGGTCGGCGAGGATCACCAGGAGGACATCACGGAAACACAAATGGCTGTCGAAATTATAACGGACAATtgcgaggaggacgaggaggacgaggacaGTGCTgtcatttttataaagaaagaGGGTTCCCCGCAATTCACGTCGGGAGATGATTTGATGGCGGTTGAGGCCCTGCGTCAGTTGGGTGGAATGTATCCTTGCTTCGAGGATAAGAAAGTTGCATGTGCCACTTGCAACAATACCTTTGCGGCTAATGAAATAGCTAAGCATCAAGCTGGTTGTAGATCGTATAAACATTCATGCTATACTTGTGGTGAAAAGTTTGAGAGGAAAATAGATCTTAACAATCATATGGTTTGTCATCAAGTTGATAGGCCACATGCTTGCAGGACTTGTGGAAATTTATTTAGGTCCAAGGCTAATCTACAGGTGCACATGGCTGAAAAGCATCAGATTGAAAGACCTCATAAGTGTACCGTTTGTGGAGCAGATTTTCAAAGGCCATCCAGTTTGTCTAACCACATGAAAATTCACAGCTATGTTGCAGGCAGAGCAATCATGCAACCTCAACCAGGTCCTGTAATTTCTGatgttaaaagtataaaagatGTTTCAGAGTCACAAGACGGCTCGGTTTTAGCTACAGTTCAAACtctacaaaattttgaaataccaCAAGTGCAATGGGCTGTACAAATTGCCACAGATCAGGGTAATATTGATGGCCTTGCTAGTCAGTCTGATAAGATAGATACTTTACAAGAATTTACTGTATTGCCAAATGGAGAGGTTGCACAGTTTACAGAGTACACAACTCCAAATGCTGTGGAAAATACTAGTTTCATTAATGACAAGAGGACTTACATAGAGATAGATttacaagaaaacaaaaaatatacttgCAGCCAGTGTGGCGTCAGTTTTGCGCGTGCGGCATCTTTAACTCAGCATGAAAAAGTACACGCAAAAATCTCTCCAGTCGAATGCGAATATTGTGACAAACAATTCCAAGACGCTCATTTTTTAGCGACACATCAAACCtcttgtacaaaaaaattaatgaaaagttCAGAATCAAATGCGTCTAACGCCAAATGGGGAAAGCATGCTTGCTCGGAGTGCGGTAAAAAGTTTactacaaaacaaaaaatgttcaGGCACCAGTGGAtacacagaaaaaaaacacattccTGCGAAGTCTGCGGTACTCAATTTGAAAAGCAATCTGAGCTAGACGAGCACAGATTGTCCGCACATCCAGGAGACTCGCCTTTTACTTGTCAAGAATGCGGAAAAAGTTTTGTGTCTCGACAAGGTCTCTGGGAACACGGCAGAACTCACGCGGGTAGTCCTGCTTACTTCCACTGTGACACCTGctcaaaaacattttcttccAGGCAAGGATATTTAATACATCATCGAACTCACACTGGTGAGCGTCCTTACGGCTGTAAATATTGTTGGAAGTCCTTTAGAGATGGAGGTACGCTCAGGAAACACGAGAGAATACATACAGGAGAAAGGCCTCACGTTTGCCCACTGTGTAAAAGAGCGTTCAATCAAAAAGTTGTCTTAAGAGAGCACGTCCGATGGGTTCACGCCGCGGGAAAAAATGAGACTGAAATCACAGGTCCTCCATTTCCATGTCCCATATGTGACACTTTAACACAGGATCGTGATGAGTTATGTGCTCACATCGTAAAGCATTCGGATCAAATGATTGCTCAAACCAAAGCTAAAACGGTCAATTCATCGGTTAAAGTTAAACCGCCGCAAAAACGAAAAGGAAAACCGACAGAAGCAAAAGTAAAAGCAGCTAAATCAAAAGCACCAGCCGAAGGGCGAATAATCACTGCAGAAGAACAAAATGAAGCTCTTCTTTCAATTACAGAGCAGTTGGATCCAACAGCAGAGCCCCAAGATACTTAccttattgtaaaaaatgagTATAATGATGCCATGTGTATTAAAGCTTATGCAAAATTAAGTGATGTCACACAGGCTGATGGAAGTGgatcaattaatgttattGCATTTGCAAAACCTGATGATAAAGAACAGGAAGAGGCAGACATTGTTGATAATGATGAATCTAATACAGTACACTTGATACCCTTTAATACAGCATCAGGTGAAacagtttttatttctacagataaacaaaataacacgTTACATCTTATCtcaaaacaaaatgaaaattcaccTGTTTTGGCTATTCCTAACCCAGAATCTGATGATAATTTTCCCAATGATATAGCACAAATACATGATTCTGAAACCCATCTTGAAATGTCTGTGAGGGACTCTCCAATTCCTGAAGAAGAATGTAGTGAAGATATTCCTTCAGATTCTTTATTAGTTGAACACGCATCTATTAAAGATGAATATTCTGAAAATACAGCCAATGAAAGTGATGATAGTGAGGATGAATGTGAAGAACTAGTATGCGGTATCTGTGGTAGTGATTTTGATGACAAAAACATTCTGATGGAACatgtaaaaattcatatataa
- Protein Sequence
- MMETNESEQYVAFTLDAMHEGIQNNVSHEEICEPVDECVLQEEDITEVTVGEDHQEDITETQMAVEIITDNCEEDEEDEDSAVIFIKKEGSPQFTSGDDLMAVEALRQLGGMYPCFEDKKVACATCNNTFAANEIAKHQAGCRSYKHSCYTCGEKFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKANLQVHMAEKHQIERPHKCTVCGADFQRPSSLSNHMKIHSYVAGRAIMQPQPGPVISDVKSIKDVSESQDGSVLATVQTLQNFEIPQVQWAVQIATDQGNIDGLASQSDKIDTLQEFTVLPNGEVAQFTEYTTPNAVENTSFINDKRTYIEIDLQENKKYTCSQCGVSFARAASLTQHEKVHAKISPVECEYCDKQFQDAHFLATHQTSCTKKLMKSSESNASNAKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQSELDEHRLSAHPGDSPFTCQECGKSFVSRQGLWEHGRTHAGSPAYFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKYCWKSFRDGGTLRKHERIHTGERPHVCPLCKRAFNQKVVLREHVRWVHAAGKNETEITGPPFPCPICDTLTQDRDELCAHIVKHSDQMIAQTKAKTVNSSVKVKPPQKRKGKPTEAKVKAAKSKAPAEGRIITAEEQNEALLSITEQLDPTAEPQDTYLIVKNEYNDAMCIKAYAKLSDVTQADGSGSINVIAFAKPDDKEQEEADIVDNDESNTVHLIPFNTASGETVFISTDKQNNTLHLISKQNENSPVLAIPNPESDDNFPNDIAQIHDSETHLEMSVRDSPIPEEECSEDIPSDSLLVEHASIKDEYSENTANESDDSEDECEELVCGICGSDFDDKNILMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878319;
- 90% Identity
- -
- 80% Identity
- -