Labn002218.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010000309.1:1552-13353[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 2.2e-05 0.0038 18.9 0.9 1 23 267 289 267 289 0.98 2 31 0.0035 0.63 11.9 1.9 1 23 314 337 314 337 0.96 3 31 0.00018 0.031 16.0 0.5 2 23 344 366 343 366 0.96 4 31 0.0004 0.07 14.9 3.2 1 23 388 411 388 411 0.97 5 31 0.11 19 7.3 0.0 2 23 532 553 531 553 0.96 6 31 0.11 19 7.2 0.1 1 23 559 582 559 582 0.86 7 31 0.00016 0.027 16.2 0.1 1 23 653 676 653 676 0.96 8 31 0.071 13 7.8 0.5 1 23 682 705 682 705 0.95 9 31 0.16 28 6.7 1.5 1 23 718 740 718 740 0.97 10 31 4.7e-05 0.0083 17.8 0.9 3 23 784 805 783 805 0.96 11 31 1 1.8e+02 4.2 0.5 2 23 866 889 865 889 0.93 12 31 4.1 7.2e+02 2.3 0.0 2 23 898 920 898 920 0.84 13 31 0.26 46 6.0 0.1 2 23 927 949 926 949 0.93 14 31 0.00011 0.02 16.6 0.6 3 23 959 979 957 979 0.98 15 31 0.012 2.1 10.3 0.7 2 23 1029 1052 1028 1052 0.96 16 31 5.8e-05 0.01 17.5 2.4 1 23 1055 1078 1055 1078 0.97 17 31 0.0033 0.58 12.0 0.6 2 23 1085 1107 1084 1107 0.95 18 31 0.00093 0.16 13.7 4.8 1 21 1148 1168 1148 1169 0.94 19 31 0.0035 0.62 11.9 1.8 2 23 1183 1204 1182 1205 0.93 20 31 0.25 43 6.1 3.3 1 23 1208 1230 1208 1231 0.95 21 31 0.032 5.7 8.9 0.8 2 23 1238 1261 1237 1261 0.91 22 31 1.3 2.2e+02 3.9 0.2 2 23 1269 1291 1269 1291 0.95 23 31 4.8 8.4e+02 2.1 0.0 2 23 1298 1320 1297 1320 0.87 24 31 0.3 52 5.8 2.7 2 23 1329 1351 1329 1351 0.96 25 31 0.16 29 6.7 0.9 2 23 1357 1379 1357 1379 0.93 26 31 0.1 18 7.3 0.2 1 23 1447 1470 1447 1470 0.96 27 31 0.013 2.4 10.1 1.3 1 21 1500 1520 1500 1521 0.93 28 31 0.42 74 5.4 1.9 2 23 1624 1646 1623 1646 0.94 29 31 0.24 43 6.1 0.6 2 23 1653 1675 1652 1675 0.95 30 31 0.4 71 5.4 1.2 1 23 1686 1708 1686 1708 0.94 31 31 0.053 9.3 8.2 0.2 3 21 1717 1735 1716 1736 0.94
Sequence Information
- Coding Sequence
- ATGCAACTGACGCCTTCGAGAGCATTTAAGgTAAGGGAGGAGGACAAATTACCAAAATGCCTCTGCTTCAGATGCATGTTCAAGCTGGAGAATTTTTTTGACTTCAGAGTTGCGTGCTTGCAAGCGGAGGAGGTACTTTTAAAGCAGTGGGATACGCTGATTGATGTTGATCagTCGAAAGTTAAAATCGAAAGCGGCCAAGATGTGGAAGCCTACTCGGAGCTGCGCATGGAGCTGCTCAAGGATAAGGAGAGTGTCGGCGGTAGCCAGAGTGGCGGCGGCATGGCACCGATGCTCGCGCAGGCGGAGGTGCCGGTCGTCAATCCAAACGCTGCTCTCGGCACCCCGCCCCGGCTCAAGTCCGCCGAGTCAGAGGAGGAAGTCGTGCCTCCTGGAGTGGCGATTCACCCCGGCCTCGACGACCACCACCCGATGCTCGGGCACCACCTCATcagcccagcagcagcaggcagcagcagtGCTGGTGGTGCGCTCGGGGCTGCCAACGAGGAGCTCGACGATCACGACCGCTCCGACGAGTACGAGATGGACATGGAGACCAACCCTAGCGACTTTCTCGAGATGAGCGCCATGGTCCCCGAGGAGGAGCACGTGATTCCACTCTTGCCcccagctgcagcagcagcagcaggaccATCCTTGCTCTTGCCACCtccgccgccaccgccgacgACCGCTCAGCACCGGCAATCCGCACAgccccaacagcagcagcagcatcattatcatcatcatagcCAGGAGATCTTTCAGCACCGGAACGAGCAGCACGAAGTCTACGTTTGCTCGCTCTGCAGCAAGGCCTTCAGCTCGAAGGGCCACCTCTCCCTGCACGCGCGCATACACGTTGGCGCGGGCGACGGGGCGGTTATCGGCGAGAAGGTCATTACGGACGACCACACCTCCTACAAACGGCCCTACCAGTGCGATCTTTGCAACAAGTCCTACTCGACGGCCAAGCACCGCTGGGGACATGTTTCCACGACGCATCGGGGTCATCCAGCAGTGACTTGCGGCTACTGCTCGCGCATTTACTCGACCCGCACGAATCTCGAGGAGCACATTAAATCGAGGCACGCTGGCCAGCCTCCTCCCCCAGAGATGGCTGCCCAATACGTTCAACAGGCGCACGAGTCGCGCTTCCAATGCAAGACCTGCCCGAAGATGTACTCGAACGTCACGGACCTCAATAAGCACAGTAGGATCTGTCACAACGAGCAACAGCGCAAAGAAGCTGCTGcggccgccgccgctgctgctgctgctgctgcttccaaTAACAGCTATAATCCCCAGAGTTTTTGTAAGGACTTTAATACGTCTAAATTGAAGAATGCCTTGGAAGCTGCTTCGGATATGTCTAGCATCGATTCGGATTACGAAAGCAAAGATTATAAGAGCGCCGAGGCCAAATTAGCAAAAAATCCTCAGCTGACTATCCTTAAACAGGCGCTGATCAAGGGTGATTGCGTTAAAAAGGAGTACGACGAGAGACAGAAGATGTTGAGCAAACAAAAGAAACGAACCAATGCCACGAACAAGGAAACGCTAGATTTGGATATGAAGCGGTGGTACTGCGAGGCTTGCCCCCTGAACTTTGCAATGGTGGAAGAGCTACGACAGCACGAGAGGACGCACGACGCCGAAAAGCCgtacatatgtatattgtgCGAAAAAGATTTTGCCTTGAAGTCGTCGCTCAGTAGACACATTGTAGCATCACACGGTGTTGATCCTACACCATTGATCGAGAGTGATAAGTGCCTCAAGAAGTCGATGCAAAGTGCAACAAGCAACGATCAGATACAATCTGTCATCAAACAGGAAGACGGCAATGCCAAAGATAACTCGGAGTCTCCATATTCTGATAATCTGgacaatgacgacgacgagCACGAAAATGGAAATGAAAATATGCTCGAGGTGGAGACGGTCTTTGTCTGCGAAATATGTACACGAGATTTCAACGACCGAGCATCTCTGTGGTTGCATATTCGTGCCACTCACAAGGAATACGCTGCGTTTGCTTGTGGAATATGTTTAAAGATTTGCGGCGATAATACACAACTTATGAACCATGTTAGTATGTATCATGGGGCTTCGCAACTTGCAATGTCCGAGCAGAGGAgATATAGCTGTACGATATGTGGAAGGCAGCACGATTCAAGGAAAAAGCTTATAACTCACGTTTCGATTCACAATCTGGACCCCAATTATGATCCAGCGCGATTTGTGCAGCTCAACGCCAATTATTACAATGAAAGCGTCAACAGTAATGAAGGCAACGAGCTAATTATGGATTGCGATGATGAAAGCGAGAAAGTCGACTGCTACATCTGTTATAAATCCTTCCCTAATGAGGACCACCTGATACGTCATCAAAGAAACGCACATAAAACCGAGAGCATGATCAACGAGTACGGTGGTAATGGTGACCCTACTGGCCAAAATGGAAACATCAATCGAGCTCAGTATCATTTGTTCTTTGTCTGTGAACTCTGTGGCAGTTCGCATCCCAGCAAATGGGAGCGCTGGTTGCATGTCAGCAGCGTGCATGAACACGAACTTGCTATAAAGTGTGAGCGTGACGATTGTGCCAAGATCTTTGCAACAAAGGCCTTACGGAACGAACACGCACAACACCATCAACTACAAGGCAGCTCTCCTAATACCTGCGAAATCTGCGGCAAGTTGTGGGGTAGCAGGGTCGATTACTGGAAGCACGTGATGGGTGTGCACTCGGACACCGTGCCGCTTATATGCGGTGTCTGCCTCAAAGTCTTCCCAGATGTGCTGCAACTCAGCCAGCATGTCAAGCTAAAGCACTGGCCTCTGACAAACGGTGATTTTGGCTGTGATATTTGTGGCCGACCATACTCCAATAAGAGTAAAATGTTGCGACATCGCAAGATACACGGCCTCGATGGCGAGGCATTTAATCCAGCTGCCAGCAACAGTAGTCTGGTAATTCACGATGCGTCGAACGAAATGTCACCCGAGTCGATGCAGCTAGACAATGGCCTGCCACCACAGCCGATCGAACCTTCGGCCATGATGGACTTGACCTGCGAGGACTGTGGTGACTTGAAATTTAGCAGTCTAGAAGAACTATGCACCCATCGGCGAATCGTGCACAACCGTTTCCCTTGCGACCTGTGCAACAAGTTCTATTACCGTAGTTCACATCTTTGGAAACACGTTAATCGCGTGCACAAGGGCCACGAGGACGTGACCTGTCGGTACTGCTTTAAAACGAGTGCCTCTCGCGATCATCTCGCCGCCCACATTGCCAAAATTCACCGCTACGAACCTGACGTCAAGAATGACCTAGCGCTGCGAGACGCGGTGCAAGTTAAATATAGCAAGAGCACAACTGGCAGCGTTTACGGGGAAGCCAATGACACTGAAGAAGATGGATTGCATTTTTGCGAAAAGTGTAATAAGTCGTTCCACAAGCGCTACCTGTTGCGCCGTCATATGAAGGGTTGCCAGAACTATCGCAAGGATCCTGGTGCCTTACTGACACGTTGTCGCGCCTGTGAACGAATCTTCAAAGATCGTGCCAGTTTGCAGAAACATATTGAGAATCATCACAGCTCTTACACCTGTCATCTTTGTAACGAGACGGTTACCTCCAAGCTTGGCATTATGACTCATAATCGTATGCATCACATGCATCATCCAGACCTCACCTGTGAACTTGAGAGTTGCCGAAAGCTTTTTAGAACTAAAGAAGATCTGGAATCTCATCGCAAAGACCATAAACATCATGGCAGCCCCAATGTCTGCGACTTTTGTGGTGACACGGTCGAAAATAAACTCAAGCTCAAAATGCATATACTCAGTCTCCATAGAAACGAAATTGGAGTTTCCTGCGGTGTCTGTCTGATACCTATGAAAGATCCTAAGGATCTGAAAAAGCATGTTGAAGATGTTCACGTAGGCGTGCTCGACAGGCCCAACACCTGCCAGgtttgtGGCAAACAATACGCTTCAAAATGGAAAGCGTTTGATCACACGAAGAAATGCCATGGCAAAGTATTCCGCACGTGTAAACAATGTCTCGCAGTCTTTACGTCGGACGAAGATTTACGCTCGCATTACGAACACATTCACAATATTCCGAAAGATCAGCTTGACGCATTCCAGTATAGGCTTGAGGTTGCAGGAAGCAAAATGGACGATTACGATCTTGGCTCGCTCGAGGTTGTTGTCAAGGAGGAGCCCGAGGAGCTCGACTTTGACGTTGATACGACGTTTGATGACGACAACGGCAATTCAAACGACTCCAAGCGCCGACGCTCGATGTGCGACACTTTTGACTGCGAAATGTGCCCGGAGATTTTCCTCAATTATGATCTTCTTTCCTCCCACTATCGCAATGTGCACAACACCGATCCTCAACGCATGTACAAACGTATACGAATTGAATCGCCGACCTCGAGTGCCAAGAAGAAAATGCGCGAACGTGAGAACTATGAGTGCAAGAACTGTCAAAAGCAATTCTGTACAAAGCCTCTATACGTAGATCACGTAAACGTGTGTAATCGAAAGTCCATGCCGCCTACAACTTCGATACTCGAGGCGCACCTCAAGGGCAACAGTCAGATCATTAAGCGTGAAGAGCCCGAGCCTATACTCTGTGAAACGAATCTCAACATTCCGGACTTTAACCTTTTCGAAGACATCAACATGCAACTGTCAGGTCAGAAACCAGTGCCAAGCCTGATGCCACTAGgaggtagtggtggtggcggcggcggcggtaaCCAACTTGCTGGCAAGTCTTCAAAGTATTCGAGAAAAGATTCGCGTAAGGTGTACGACGAGTCGACCAACACCGAGTGCACCTGTGAGGTCTGTGGCAAGCAGTGGCCTGCGAAAAAGCATCTTTGGCAGCATCTAATACGCTTCCATAGAGCCGAAGCTGCGGTCACCTGTGGCGTCTGTCTCAAGCTCTGCTCCACGTACGATGATTTATCCGATCACTTGAAAAACGTGCACCCGGCTATCCTGTCCACCGCTGGTAACAATTTCACTTGCAAAATTTGTGGTCGTTACCATAACGCGCGCAGCAAGTTGCTACTCCACATGGGTATACACATCAACTGTAAGGGTAACATCTTGTGCCAACGATGCAACCGTACCTTCGAGAATGACGAGAAGCTGAAGGAACATATTGCGACGTGCATGGGGGCCCGCGAAGGAGTCGAGAGCGGCGTTGTCGGTGAGCAGTTCCCCAAGGAAGAAATCGAGGAGAAGGGCAGTCTCATTGGCGACGAGGAGGAAGACCAAGAAGAGGAGAACGAAGGGGGAAATGAGTACGAGTCCGACGACGAAAGCGGGGCCGCGCGTGATTCCGACAACGCCGACAGCAGTTCCAACGATTCGGacagcagtagcaatagcagcaacagctCGAGTGATGATGACGACGAGAGTGACGACGATGAGGAGGAAGGTAGCGACGGGGGCAGGTCACGAAATCTTGACGAGGAGAGTAGTAAGGACTCGGACAACAACGTCGGCCAAATGGCTCGGCCAGTCAAAGCCGAGGAGAACGAAACGATGAGTCTCGGCGATGAGGACGAGAACGGAGAGGAGAGCGATGAAAAACCACGCTACGAGCCTGCGTTGTCCGAGTCCGAGGAGGACGACGAGTACCTGAAGAAACAGCGGGAGCAGCAGCAACGCGAGATCAAAGACAGATACAAACTTGCTCAAAAGGAGCCGATGCTCGTCAATTACTCCGAGGATGAGGGTCCGACAGTTCTGAGTCCTATGCTGTCTGCGCCGGTGCCGACAAGCAGCGGCAACGacattaagaaagaaaataatgaatctAATACCGAAGAAAATAGCAGCGACGAAGCTGATGATGACTCGGATGACGATGGCCATGTTGTTCAGCAGACCGAGATCGTAGATCCAAACGGCGCTTTTCACGCGGACAACTCGAGAAGCAGCAATGATGgtGAAGAAGAGCAAGATGACATTGAGGAGCAAGAAGTTGAAGAAGAACAAGAGGAAGAGGTCGATCATGAAGAAATCGCAGAAGTAGGAGTGGAAGAACAAGAAGTCGTAGAACAAGAAGTGCACGAAGAGCACGAGGGACATGAGGAGCATGAAGAACAAGAAGTGCACGTGGATCATGAAGAACAAGAATTGGAGACTGAAGAGGTAGAAGATGAGCACTGCATAAACGAATCTGAAGTGCTTGAAGTCGACGAGAATGACATGCATAATTTAAATGGAACTGTGCTCATGCTTGCCAATGACGCAGACGGCAATCAGATTCTAATCGAGCGTAACATGGCTGATCTCGAAAACGACGACTCGGTACACGACATGGCTCAGTACGTATTCCAAGACGGCACGGGCTTCGCGCTCGAAGATTACGAAGCGATAGTGGAAGGTGCTCAAcctgatgatgaggatgatgatcaGCAGCAtcttgatcatcatcatcagcagcaggcTTACGAGATGGAAATCGGTCAGGAACacgaagaggaggaagaggtggTCGGTGGGGAAGAGGACGAGGAAATGCACGGGATTGAAGAAGAGGTCGAAGCCGAAGAGATACACGAGGAGGAGGTAGTAGAGGCTGACGATGACGATGTTGACGGGATAAGTGCCAAAAGCTAA
- Protein Sequence
- MQLTPSRAFKVREEDKLPKCLCFRCMFKLENFFDFRVACLQAEEVLLKQWDTLIDVDQSKVKIESGQDVEAYSELRMELLKDKESVGGSQSGGGMAPMLAQAEVPVVNPNAALGTPPRLKSAESEEEVVPPGVAIHPGLDDHHPMLGHHLISPAAAGSSSAGGALGAANEELDDHDRSDEYEMDMETNPSDFLEMSAMVPEEEHVIPLLPPAAAAAAGPSLLLPPPPPPPTTAQHRQSAQPQQQQQHHYHHHSQEIFQHRNEQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDGAVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGQPPPPEMAAQYVQQAHESRFQCKTCPKMYSNVTDLNKHSRICHNEQQRKEAAAAAAAAAAAAASNNSYNPQSFCKDFNTSKLKNALEAASDMSSIDSDYESKDYKSAEAKLAKNPQLTILKQALIKGDCVKKEYDERQKMLSKQKKRTNATNKETLDLDMKRWYCEACPLNFAMVEELRQHERTHDAEKPYICILCEKDFALKSSLSRHIVASHGVDPTPLIESDKCLKKSMQSATSNDQIQSVIKQEDGNAKDNSESPYSDNLDNDDDEHENGNENMLEVETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGICLKICGDNTQLMNHVSMYHGASQLAMSEQRRYSCTICGRQHDSRKKLITHVSIHNLDPNYDPARFVQLNANYYNESVNSNEGNELIMDCDDESEKVDCYICYKSFPNEDHLIRHQRNAHKTESMINEYGGNGDPTGQNGNINRAQYHLFFVCELCGSSHPSKWERWLHVSSVHEHELAIKCERDDCAKIFATKALRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVLQLSQHVKLKHWPLTNGDFGCDICGRPYSNKSKMLRHRKIHGLDGEAFNPAASNSSLVIHDASNEMSPESMQLDNGLPPQPIEPSAMMDLTCEDCGDLKFSSLEELCTHRRIVHNRFPCDLCNKFYYRSSHLWKHVNRVHKGHEDVTCRYCFKTSASRDHLAAHIAKIHRYEPDVKNDLALRDAVQVKYSKSTTGSVYGEANDTEEDGLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETVTSKLGIMTHNRMHHMHHPDLTCELESCRKLFRTKEDLESHRKDHKHHGSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHVGVLDRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRSHYEHIHNIPKDQLDAFQYRLEVAGSKMDDYDLGSLEVVVKEEPEELDFDVDTTFDDDNGNSNDSKRRRSMCDTFDCEMCPEIFLNYDLLSSHYRNVHNTDPQRMYKRIRIESPTSSAKKKMRERENYECKNCQKQFCTKPLYVDHVNVCNRKSMPPTTSILEAHLKGNSQIIKREEPEPILCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGGSGGGGGGGNQLAGKSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCSTYDDLSDHLKNVHPAILSTAGNNFTCKICGRYHNARSKLLLHMGIHINCKGNILCQRCNRTFENDEKLKEHIATCMGAREGVESGVVGEQFPKEEIEEKGSLIGDEEEDQEEENEGGNEYESDDESGAARDSDNADSSSNDSDSSSNSSNSSSDDDDESDDDEEEGSDGGRSRNLDEESSKDSDNNVGQMARPVKAEENETMSLGDEDENGEESDEKPRYEPALSESEEDDEYLKKQREQQQREIKDRYKLAQKEPMLVNYSEDEGPTVLSPMLSAPVPTSSGNDIKKENNESNTEENSSDEADDDSDDDGHVVQQTEIVDPNGAFHADNSRSSNDGEEEQDDIEEQEVEEEQEEEVDHEEIAEVGVEEQEVVEQEVHEEHEGHEEHEEQEVHVDHEEQELETEEVEDEHCINESEVLEVDENDMHNLNGTVLMLANDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVEGAQPDDEDDDQQHLDHHHQQQAYEMEIGQEHEEEEEVVGGEEDEEMHGIEEEVEAEEIHEEEVVEADDDDVDGISAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073931;
- 90% Identity
- -
- 80% Identity
- -