Basic Information

Insect: Leptomastidea abnormis
Gene Symbol: -
Assembly: GCA_030522805.1
Location: JAPYZE010000373.1:26120-29597[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.003 0.54 12.1 0.1 1 20 87 106 87 108 0.94

2 13 4.7e-05 0.0082 17.8 2.5 1 23 189 212 189 212 0.94

3 13 0.00012 0.02 16.6 3.0 2 23 219 241 218 241 0.95

4 13 3.4e-05 0.0061 18.2 4.0 1 21 248 268 248 269 0.95

5 13 3.5e-08 6.1e-06 27.7 1.7 1 23 280 302 280 302 0.98

6 13 1.1e-05 0.0019 19.8 0.7 2 23 312 333 311 333 0.97

7 13 0.04 7 8.6 0.5 2 23 340 361 339 361 0.96

8 13 1.5e-06 0.00027 22.5 2.5 1 23 367 389 367 389 0.99

9 13 8.5e-06 0.0015 20.1 2.5 1 23 395 417 395 417 0.95

10 13 1.1e-05 0.0019 19.8 1.4 1 23 423 446 423 446 0.94

11 13 1.6e-06 0.00029 22.4 1.5 1 23 452 474 452 474 0.98

12 13 7.6e-08 1.3e-05 26.6 2.0 1 23 480 502 480 502 0.99

13 13 7.7e-06 0.0014 20.3 0.9 2 23 509 531 508 531 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.003	0.54	12.1	0.1	1	20	87	106	87	108	0.94
2	13	4.7e-05	0.0082	17.8	2.5	1	23	189	212	189	212	0.94
3	13	0.00012	0.02	16.6	3.0	2	23	219	241	218	241	0.95
4	13	3.4e-05	0.0061	18.2	4.0	1	21	248	268	248	269	0.95
5	13	3.5e-08	6.1e-06	27.7	1.7	1	23	280	302	280	302	0.98
6	13	1.1e-05	0.0019	19.8	0.7	2	23	312	333	311	333	0.97
7	13	0.04	7	8.6	0.5	2	23	340	361	339	361	0.96
8	13	1.5e-06	0.00027	22.5	2.5	1	23	367	389	367	389	0.99
9	13	8.5e-06	0.0015	20.1	2.5	1	23	395	417	395	417	0.95
10	13	1.1e-05	0.0019	19.8	1.4	1	23	423	446	423	446	0.94
11	13	1.6e-06	0.00029	22.4	1.5	1	23	452	474	452	474	0.98
12	13	7.6e-08	1.3e-05	26.6	2.0	1	23	480	502	480	502	0.99
13	13	7.7e-06	0.0014	20.3	0.9	2	23	509	531	508	531	0.95

Sequence Information

Coding Sequence: ATGGTCAGGGGCTTGCCTGCCCATATACACACCACGACCCAGCAATACAGAATATCCAGCGCTCTTCAGAATACCTGCGTACAGCCACGCAACCTAAAAATCCTAAAAGTGGAGAACAATTATTTGACCCAAGACGGCGTCATTGTTGAtgatttattggaaaaaaatggaCCTGATAGCTTCATTTTACCTGATATAATCGATGTTGGAGAAGAAGTGATTGCTCATAATGGACAGATTGTACAAATTATTGCTGATTATGAATGTGTTACTTGTCATAGAATATTTACAAGTGACGAATTGTTGAAAGAACATTTAGAAGTATGTCGAGAGGAAGATGATGATGTAGATATATTAGAGCTGGGTAGGATTGATGATGAttctgaagaagaagaaaatgaagatgaCAATACTAATGACTCAAATTACAATACCGATTCAAATCCACTTGAttctcaaatatttaaaaacaaagataataaaaagGTAACAATTAAGCCAGTACCAGAAGGTCAATGTCACTGCTGTGCAGAAGATATAAAAACAGCTCATTCTGGAGGCCCATTTCAATGTAAACACTGTAAATTGTCATTTAAGAAAGCAACTTCTTTGGAAAGACATACTGTAGTTGTTCATTGGGAGTCTGATACTTGTACATGCAAAGAATGTGGAGCAAGTTTTCGAGATAAAAAAGCTTTGGATAAACATCGCTATACAACtcatatgaaaacaaaaaaaatatacaaatgtgATAAATGTGATACTTATTTTTCACGAAGCTATCATTTAAATCGTCATAAACAGCAATCAGGCTGCAATGGAACTACTGCTAATAATTTCTCTTGTCAggtctGCAACAGAGTATTTACACGCAAAGATAATTTAAGAGAGCATTTAAGAACTCATGCAGGAATGCcacagagaaaaaagaaatcttgcAACCTTTGTCCAAAAGAATTTTATACAAATcaacaattaattattcatcAACGTATGCATACTGGAGAAAGACCAGTAGAGTGTGATTTatgtccaaaaaaatttttgtctacaTTAGCTATGAAAAAACATAGAAGGGTTCATACTGGAGAAAAACCTTTTGAATGCAAATATtgtcaaaaaaaatttgctgcAAGAGAAACACTTAACCGTCATCAAAGAACGCATACGGGAGAAAAACCTCATGTTTGCTCATACtgtaataaatcatttattcaagCAGCCCAATTGAGAGCTCATATATTTCACCATACTGGAGAACATGGATTTTATTGTGATATCTGTGGAAAAGCATTTAATCGTAAAGGACGTCTCACTAATCATAAGAAATTTGTTCATGAGGGTGCTACTCCATTTAAATGTGATGTATGCGATAAATCTTTCAtgagaaaagaagatttatctAAACATACTAATCTCCATGCTGGAATAAAACcgtTTAAATGCGACACTTGCGGTAAGTGTTTTGCAGCAAAATCATCACTGCAAGCTCATATGAATACTCATAGACGTGAGCCCCCTCAATCTTGTGCCGAGTGTGGAAGAGCATTTATTCGTCAAGATTGCCTAATGCGACACATAAGAGCAAAACATAGAGATCTTTTAGAAGATGTTCTGGGTGAAGcggaaaaaaaacatttacaattgCAAATGTTCAATATTGCTTTTGTTGCTTCTGAGAAAGTAAAACATGGAGAAACAAATATTCTCTCAACAGACGAATTAATGAAAGCTATAACAGAACTTTTAACTATTCTTGTAGAAAAAGAAACTTTGgagctcTTTGGTTGGTTGCAATCGCCACTACAAGATGTTTTAGAAGCTGTCATAAGAAGGTGTGGATGTGAACCGCTAACAGCAGACAGTGACTTATCATTGCCAGAAAGATTAAGAGGCAATGTTAAACTCTTATTTAATGCGGTATTAGAAGATGAAAACGTCAAATCTTTACTGACAACGCAAACTGTTGATGAAGTAATTATGCATGTTCTTAATATATCAAAAGTTAGTAAAACTGAACCAATTGATGAAGATACAAAAGAATGA
Protein Sequence: MVRGLPAHIHTTTQQYRISSALQNTCVQPRNLKILKVENNYLTQDGVIVDDLLEKNGPDSFILPDIIDVGEEVIAHNGQIVQIIADYECVTCHRIFTSDELLKEHLEVCREEDDDVDILELGRIDDDSEEEENEDDNTNDSNYNTDSNPLDSQIFKNKDNKKVTIKPVPEGQCHCCAEDIKTAHSGGPFQCKHCKLSFKKATSLERHTVVVHWESDTCTCKECGASFRDKKALDKHRYTTHMKTKKIYKCDKCDTYFSRSYHLNRHKQQSGCNGTTANNFSCQVCNRVFTRKDNLREHLRTHAGMPQRKKKSCNLCPKEFYTNQQLIIHQRMHTGERPVECDLCPKKFLSTLAMKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGEKPHVCSYCNKSFIQAAQLRAHIFHHTGEHGFYCDICGKAFNRKGRLTNHKKFVHEGATPFKCDVCDKSFMRKEDLSKHTNLHAGIKPFKCDTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDVLGEAEKKHLQLQMFNIAFVASEKVKHGETNILSTDELMKAITELLTILVEKETLELFGWLQSPLQDVLEAVIRRCGCEPLTADSDLSLPERLRGNVKLLFNAVLEDENVKSLLTTQTVDEVIMHVLNISKVSKTEPIDEDTKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00691361;
90% Identity: iTF_00073928;
80% Identity: -