Lcyl009885.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720106.1:13827789-13836613[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.9 2.3e+04 -3.7 0.0 16 35 251 269 250 276 0.65 2 5 0.00051 3 8.7 0.1 23 46 346 369 340 371 0.90 3 5 2.4e-05 0.14 13.0 0.1 21 48 372 398 368 404 0.85 4 5 0.0077 45 5.0 0.1 21 52 400 431 398 431 0.88 5 5 0.00073 4.3 8.2 0.1 20 45 427 452 425 456 0.89
Sequence Information
- Coding Sequence
- ATGGATATATGCAAAGAAGTGGTGGACCATTCAAAGTGCTATTTCTGTGTAATAAATCTGGAAggtgttaataaaaataagagaaaatcTATCACGTACCCCGAAgttgattcaataaaaaaaccagTTTCACATAGTGATGCTATACCACGTCCAAAACCACCGAAAgcagaaaattataaatctaGTGACACTGAACCAAGCTTTAAGGGACTCTCATCTGATACTGATGACGGTACACTGCAGCATTTAGTAACACAAAGGGAACTAAATGATTTGATAAGAGATATAAAGCTGTCCAAAACTGATGCCGAAATACTTGCATCACGTTTGCAACAATGGAATTCCTTACAAACATCAGTGAAAGTTTCAGAATATCGTCACAGAAGTAAAAccttttctgttttcttcTCAAAAGCAAATAACGTTCATTACTGCAACAATATTGAGGGTTTGTTCGAACGTTTTGGTACTGAACATATACCAAATGATTGGCGTCTCTTCATTGATAGCTCAAAACATAGCTTGAAGGCCGCTCTAGTGCACAACGGAAACAAACTACCCACAATACCAGTTGCGCACGCTGTTGgcgtaaaagaaaattacgaACAAATTGCACTAGTGctacaattaataaaatatgacaGCTACAAATGGCGTATATGCGCAGATTTGAAGGTTGTGGCAATAGTCACTGGCTTGCAAGGAGGGTTTACTAAATTCTGCTATTTTCTTTGCCATTGGGATAGTAGAGCAAAATCACAGCATTATGTTCAGTCATCCTGGCCAGTGAGATATAAAGTTAGGCTTAATAAAAAACTTCGTGAAGGCGTTAGATGTGCCAATATGTCCTTGAAAATACACTTCCTGCACTCAAACCTCGATTACTTTCCTCCTAATCTAGGAGCAGAAAGTGATGAACAGGGTGAACGTTTTCACCAGGATTTAATCACCATGGAAAGAAGGTATCAGGGGTATTGGGATGAGGCCATGCTAGGCAACATGTATCGGCACTTGAAAGGTCACAATGAAGTCAAACCGCACCTTTGCAAGATTTGCGATCGAGGCTTCGCCCAAGCAGCGAATCTGCAAAGACATTTATCAGTGCACAATGGTGAACGTCCGTTTGCCTGCCAGATTTGCGATAAGAGTTTTACTCAACAAGGTAATTTACGTAGGCATGAATTGATCCACACTGGAGAGAAACCATTCCGATGCAAACGGTGCGGACGAATGTTTTCACAGCGTGTTAATTTGAAGAAGCACGTCATGCTTCACCAGGGCTACAAACCATACAACTGCGATATTTGCCACAAGTCATTCTTACAAGTACAGAACTACAAGAAGCACATGGAGCGTCATGAAGAGATTAGCGAAATGAAAACTGAGAAAGCGGACGTATTCTATGAATGTGCTGTCTGCCATGTAATTTTCGCCAACTTAGAAGAATACCAAtcacatgaaatattttgcgagGTCGCCAGCGAGGAGCAAATTGAAACCACAACCGAACTGGTTGAGACGgcataa
- Protein Sequence
- MDICKEVVDHSKCYFCVINLEGVNKNKRKSITYPEVDSIKKPVSHSDAIPRPKPPKAENYKSSDTEPSFKGLSSDTDDGTLQHLVTQRELNDLIRDIKLSKTDAEILASRLQQWNSLQTSVKVSEYRHRSKTFSVFFSKANNVHYCNNIEGLFERFGTEHIPNDWRLFIDSSKHSLKAALVHNGNKLPTIPVAHAVGVKENYEQIALVLQLIKYDSYKWRICADLKVVAIVTGLQGGFTKFCYFLCHWDSRAKSQHYVQSSWPVRYKVRLNKKLREGVRCANMSLKIHFLHSNLDYFPPNLGAESDEQGERFHQDLITMERRYQGYWDEAMLGNMYRHLKGHNEVKPHLCKICDRGFAQAANLQRHLSVHNGERPFACQICDKSFTQQGNLRRHELIHTGEKPFRCKRCGRMFSQRVNLKKHVMLHQGYKPYNCDICHKSFLQVQNYKKHMERHEEISEMKTEKADVFYECAVCHVIFANLEEYQSHEIFCEVASEEQIETTTELVETA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00877382;
- 90% Identity
- iTF_00877382;
- 80% Identity
- iTF_00877382;