Lcyl014000.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720107.1:9734512-9735978[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0071 42 5.1 0.1 17 46 201 229 197 235 0.79 2 10 0.02 1.2e+02 3.6 0.1 21 50 232 260 227 263 0.83 3 10 0.0013 7.6 7.4 0.8 26 45 264 283 253 290 0.87 4 10 0.31 1.9e+03 -0.2 0.1 21 45 287 311 283 319 0.81 5 10 0.044 2.6e+02 2.5 0.1 21 45 315 341 307 349 0.84 6 10 0.029 1.7e+02 3.1 0.1 4 43 327 367 324 372 0.79 7 10 0.015 86 4.1 0.0 21 52 373 404 368 406 0.86 8 10 0.29 1.7e+03 -0.1 0.0 21 43 401 423 397 428 0.86 9 10 0.0021 12 6.8 0.1 21 52 429 460 416 461 0.85 10 10 2e-06 0.012 16.4 0.2 22 48 458 484 453 486 0.92
Sequence Information
- Coding Sequence
- ATGGCAGGGAAAATGTTGGAGATGAAGACTGTATTGTGGGCAGATTTCACGGCAGATAGTTGCAGCAGTATATCGCTTGATGAAGACACCAGATCGTCAGGCTTCCTGTTGACAGAGGATATGATCAAAGAGGAGCCAGAATTCATTATAGACGACGAGACTGAGCGGAAAAAGATCAGGAAATTCctgaaaacaaatcaaattaatgaaGAAGATATTAGAAATTTGGAGTGGCACAATTGCATTATATGTGACGAAAGGTTTCTGAATGTTCTGGAGCTATCCTTGCATGTGCAAGGACACATTAAGAAGCAAACTACCAATGCGGAGGGCAGGGAGCTGAATCACCGTGAAGCGCCAAAGACTGAATTGACTGGCTTCTCCAGGGAAGAATGTCTTCGTGACTATGTAGAGGTTAAAGTGAGCTTAGAGGGTGATCCAACATACACTTGCAAATTGtgtgtaaacaaacatttcacGAAACTAGTCGCTATCCAAAACCATATGAGAATTCACCAGAATCCTATTTATAAAGAGCGCAATTGTCACATTTGCAAAAGGAAGTTCCTGAGGCGAGACACTTTACTGGTTCATCTGCGAACGCATTCTCAGGATCGTCCATTTAAATGCGATATTTGCAAGGCGACCTTCTCACATTCGAGTTCCTTGGCGTCGCACAAACGGATCCATACTGGGGAGAAGCCATATTCCTGCAGCGTCTGCAATCAAAAGTTTCGGGAGTCTGGACAAATGTCTGCGCACCGGAAGACTCATTTCCAAAAGACGTTTAAATGCCCGCAGTGTAATCACATGTATGCATCTTCCAAGAATCTGCGCGCACATCTAAGGACCCACACTGGCGAACGTCCGTACAAATGTGCGCAGTGCGAGAAATCATTCCGAACCTCATCTGCATTGACTTTGCACAACCGAGTGCACACTGGCGAGAAACCGTACAAATGTCCTTATAGCAGTTGCAAATTTGCAACCAAACAATCGGGTACGTTGAAATGCCATCTGCGAACCCACACAGGTGAAAGGCCATTCAAATGCGATGTGTGTGATTGGTCTTTTTCGCAAAAGAAACGGCTAGTCACCCATTACCGTACCCATACCGGAGAGAAGCCGTACAAGTGCGATTACTGTGATTCAGCGTTTGTTCGTACTGACAATCTAAAGAGTCACATGCGCATCCACACCGGAGAAAAACCTTACGTATGTGGGACGTGCCACAAAGGGTTCACCCAGAAAACAACTCTCAAGGCTCACGAAAAAGTTCACTCCGGTGAAAAACCGTACCAATGTCAATTCTGTAATCGAACTTTCCGCCAGACTGGGACGCTAGTTACGCACCTGCGAATCCATGAAGGCAAAAAACCGTACCAATGTCAATTGTGTgacaaaaatttcagaaatagtGGGAATTTGAGGCGACATATTGAAATAGACCATAACGAGGTAGAGTAG
- Protein Sequence
- MAGKMLEMKTVLWADFTADSCSSISLDEDTRSSGFLLTEDMIKEEPEFIIDDETERKKIRKFLKTNQINEEDIRNLEWHNCIICDERFLNVLELSLHVQGHIKKQTTNAEGRELNHREAPKTELTGFSREECLRDYVEVKVSLEGDPTYTCKLCVNKHFTKLVAIQNHMRIHQNPIYKERNCHICKRKFLRRDTLLVHLRTHSQDRPFKCDICKATFSHSSSLASHKRIHTGEKPYSCSVCNQKFRESGQMSAHRKTHFQKTFKCPQCNHMYASSKNLRAHLRTHTGERPYKCAQCEKSFRTSSALTLHNRVHTGEKPYKCPYSSCKFATKQSGTLKCHLRTHTGERPFKCDVCDWSFSQKKRLVTHYRTHTGEKPYKCDYCDSAFVRTDNLKSHMRIHTGEKPYVCGTCHKGFTQKTTLKAHEKVHSGEKPYQCQFCNRTFRQTGTLVTHLRIHEGKKPYQCQLCDKNFRNSGNLRRHIEIDHNEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00877307;
- 90% Identity
- iTF_00877307;
- 80% Identity
- iTF_00877307;