Lcyl022322.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963082835.1
- Location
- OY720108.1:23460159-23463306[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-110 4.4e-106 355.2 33.2 1 299 116 400 116 401 0.91 2 2 0.1 1.5e+03 -1.1 3.9 213 245 423 454 403 475 0.52
Sequence Information
- Coding Sequence
- ATGAATTCAGACATTGAAGTAAATTTGtgcaatttcaacaaaatggaTAGTGATTTTGGGAGAATTAACAAAGGACAATTCAATATAAAAGACAGTGACTTAGTAGATTCTGATAATCCCATAAAAGATATGAATTTAGTTCAAGATCTTGTAAATAAATGCGCTGAAGATGAAAATCCTTTGATAAACGATGTCGTACCTAAAACAACAGTTGttgataacaatttaaatgaatcGAATGTTGAGAAAACATCAATTGGCGAACAAGAAAGTGATGATAATGAATTTTCTGATTATGATGAAAATGCATTTGTCGTTGAGCTGTTGGAAAAAGCCAATGAAATTGCGGAGGCCAGATTAGCCGCCCGTCGTCAAGCACGTGCAGAAGCACGTGAAATTCGAATGCGTGAACTTGAACGTCAACAGAAGGAGCAAGAACAAAATGCTGATAGAGTGTTCGATATGCAGACAGCAGCAGGAATCGACCCTTTATCAAGATCTCGGCTTACAATGGCAGGAAACGCTTGTCGTGGTACATCAATGTCATCCAGACGAAGTAGTGAAGACTCCCTGGAGGAGGAAAGTCGTAGCTTACGCGACATTAGGCATGAACTCAAAGATGTTGAAGAAAGATTTAGGAAAGCAATGATAGCAAATGCACAATTGGACAATGAAAGAGCTTCGCAATCGTACCAAATTCAATTGTTGAAGGACAAGTTGGAGGAAATGGATGAAACTGTCGCCCAACTTCAGAGAGAATATAAAGCAAAATGTCGTGATCACAACgctttaaaaagaaattttgataaattagaagaagaattaaaattagttcGTGGACAATTAAATGAAAGGGATACTCTAATAACTGAACAGGGTTTAGTTATAGTATTGGTAGAAAATGAGGATGGCTCAGACGCCAGACGCGCTCTAGTCAGTATGGAGAACGCACAATTGTTAAGTTCTGTTCAAGGTTCTTTAGatGTTCGACTTAAAAAGTTCACTGAAGAAAAGCAACAACTTCAGAAAGAAGTTAAAATTCTTCAGCAGGAGTTGAATGATGTTAAGTCGCAGGGACGACGAGGAGGATCTTTGAATGGTCCTTTAGGAATTGAGGATGATTATGATGCTCAAaGAGAAGCAAATAAATTGATAGCCGATTATAAGTATAAACTGCAAAAATCCGAACAGGAAATAGCTAGTCTTCAAGCTTCTCTAGCAAGATCTGAAACTCAAGTCATAAGATATAAAAGTACCGCAGAAGCAGCAGAAAAAGCCGAATCcgaattaaaaattgaaaggaGAAAACTTCAACGTGAAAATCGTGAGGCAATGGAGCGCCTTGAGGAGCTAGAAACAACCAATAATCATCTATTAAAACGCTTAGATAAACTAAAGAACGCGAAAAGTGCACTACTGAAAGACCTGTGA
- Protein Sequence
- MNSDIEVNLCNFNKMDSDFGRINKGQFNIKDSDLVDSDNPIKDMNLVQDLVNKCAEDENPLINDVVPKTTVVDNNLNESNVEKTSIGEQESDDNEFSDYDENAFVVELLEKANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRLTMAGNACRGTSMSSRRSSEDSLEEESRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMDETVAQLQREYKAKCRDHNALKRNFDKLEEELKLVRGQLNERDTLITEQGLVIVLVENEDGSDARRALVSMENAQLLSSVQGSLDVRLKKFTEEKQQLQKEVKILQQELNDVKSQGRRGGSLNGPLGIEDDYDAQREANKLIADYKYKLQKSEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREAMERLEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -