Lsin018234.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- Gata5
- Assembly
- GCA_905404315.1
- Location
- FR990171.1:8444528-8446067[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.7 1.7e+04 -3.4 2.4 23 27 12 16 8 17 0.77 2 3 7.1e-06 0.026 15.2 0.1 24 35 93 104 93 105 0.93 3 3 7.1e-06 0.026 15.2 0.1 24 35 169 180 169 181 0.93
Sequence Information
- Coding Sequence
- ATGGTGTCAACGCGTGCGGCCTGTACTACAAGCTGCACGGCGTGCCGCGCCCCACGGCCATGCGGCGCGACACCATCCACACGCGGCGCCGGCGCCCGCGCCACGAGCTCAAGACCTCGCGCTCCCTCCGCGAGATGGTGTCAACGCGTGCGGCCTGTACTACAAGCTGCACGGCGTGCCGCGCCCCACGGCCATGCGGCGCGACACCATCCACACGCGGCGCCGGCGCCCGCGCCACGAGCTCAAGACCTCGCGCTCCCTCCGCGAGATGGTGTCAACGCGTGCGGCCTGTACTACAAGCTGCACGGCGTGCCGCGCCCCACGGCCATGCGGCGCGACACCATCCACACGCGGCGCCGGCGCCCGCGCCACGAGCTCAAGACCTCGCGCTCCCCTGCACGGCGTGCCGCGCCCCACGGCCATGCGGCGCGACACCATCCACACGCGGCGCCGGCGCCCGCGCCACGAGCTCAAGACCTCGCGCTCCCTCCGCGAGATGGTGTCAACGCGTGCGGCCTGTACTACAAGCTGCACGGCGTGCCGCGCCCCACGGCCATGCGGCGCGACACCATCCACACGCGGCGCCGGCGCCCGCGCCACGAGCTCAAGACCTCGCGCTCCCGTGAGTACACTCTTATAGAGAGCCCGCTCTACACTTAG
- Protein Sequence
- MVSTRAACTTSCTACRAPRPCGATPSTRGAGARATSSRPRAPSARWCQRVRPVLQAARRAAPHGHAARHHPHAAPAPAPRAQDLALPPRDGVNACGLYYKLHGVPRPTAMRRDTIHTRRRRPRHELKTSRSPARRAAPHGHAARHHPHAAPAPAPRAQDLALPPRDGVNACGLYYKLHGVPRPTAMRRDTIHTRRRRPRHELKTSRSREYTLIESPLYT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876700;
- 90% Identity
- -
- 80% Identity
- -