Lsin019916.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990173.1:9127820-9149214[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.54 73 5.3 0.2 1 23 119 141 119 141 0.95 2 12 0.01 1.3 10.7 2.6 1 23 148 170 148 170 0.98 3 12 0.65 87 5.0 0.9 1 15 174 188 174 197 0.84 4 12 0.00018 0.024 16.2 1.4 1 23 202 225 202 225 0.95 5 12 0.00014 0.018 16.6 0.7 2 23 232 253 231 253 0.97 6 12 8.1e-05 0.011 17.3 6.7 2 23 264 285 264 285 0.97 7 12 0.0021 0.28 12.8 0.1 2 23 292 314 291 314 0.92 8 12 0.00055 0.074 14.7 1.9 1 23 321 344 321 344 0.96 9 12 0.0063 0.85 11.3 0.1 5 23 354 373 352 373 0.93 10 12 2.3e-05 0.0031 19.0 0.7 3 23 384 404 382 404 0.96 11 12 9.6e-07 0.00013 23.3 0.5 1 23 409 432 409 432 0.97 12 12 2.2e-06 0.0003 22.2 1.0 1 23 466 489 466 489 0.97
Sequence Information
- Coding Sequence
- ATGGAGACAATAGTTAAAATTGAACGGGAAGATGAACCAGAAGATAACATAGACACAGAAACCTCAGTCGCTATTAAAACGGAACCCGATGATGACACTGAAATAAATGTGTCTTCGGATTGTAAGATACCAGAAACCCTAATTAGTAATGATGAGTCTGGCGACAAGAAGTCATCTAAACCAATTAAAATGGAGTCTGTACTGAATGTTGAATGTGTAATAGCCGAAGATAAAAAACTAGAAGTAAATGACTATGCATACAGTGCACTCAGTCAGATAGAGATAGTGACAATAACAGAAGAGGAGAGACAGATAGAGTTCCAAGAGTTGTATGAATCCCGAAAACATATGAATCATATTTGTGATAAGTGTGCTATCGGCTATGTTATCAAGGAGGCATATGATATGCATATGAAGATGCATTCTCCGgagtCCGGGTCTTACGTGTGCTCGCTATGTGACACGTACCTAAAGACGGAAGAAACGCTGCACCGTCACAAACTGCGTCATTACCGCCGCTACCGTTGCATGGTGTGCGGAGTGCGCTACAAGGACCGTGACGCGTGCGCAGGACACGTGTCGTTCTCGCACGCCGGCACAACCTTCCGCTGCGACCAGTGCACCTCAGAATTCaaACGTCCGCAATACTTGAAGCGGCACATAGAACAGATGCACCTGAAGGCCAACCCGATGGAGTGTCCTGTCTGCCACCAGGTGTTCTATGAGAGTGGATGGTTCCGAAACCACGTGAGGAAGCACAACAAAGAAGTGCAAGAGTCGAAGCAAGCGTCGTGTCCGGTGTGCCACCGTCACTTCAAACACAAGTCGTACCTGCGCCAACACCTGCTGGTGCACCGAGCCGCTCGGGACGTGACCTGCCCGGAGTGCTCCGAGGTCTTCATCAACTCGCATCTCCTCGACCTGCACTACGAGGAGGCGCACAAGGACAACTTTGTCGTGTACCAGTGCGAGCACTGCAAGCGCATGTACTTCTCGAAGGGCGAGGTGCGCTCGCACATCATGTGGTCGCACCTGCAGCACGCGGGCGGACACCCGTGCACGTGCGGCCGCATGTTCCGCACGCCCGTGCGCCTGCGGGAACACATCGCCGTCAAACACCTGGGCGCCGTGCCGCCGCGCGACAAACACTGCCCTATCTGCGACAAGGCCTTTGCGaaCCAGCAAGTATTGACACGACATGTTAAGGGCCACAAGGGCGAGTTGTATCCGTGTACGGAGTGCGGGCGCACCTTCCGTACGCAGTCATACGTGAAGGTGCACTACCAGATCGTGCACCTGCACATGACGCGCTCCGAGATACGACGGCAGCGCCGCAGGAAGCTGATCATGGTGCCCGACGCCGCGGAGGAGTCGCAGCAAGACTTCGACGAAGAGTTCCCGTGCGTTGAGTGTGGCAAGACATTCAAGACGCAGTCTTACGTGAAGGTCCACTACAACATGAAGCACCGCAACATGTCGCGCGAGGAAGCCAAGCGGAGGAGCAAGGAGCTGAACGTGGCCGACGTGGTGGGGCCCCGCCTCGAGCAGGTGTTCGTCAAGACGGAGCCCCAGGAGGCCCTCGCAGTGCCCATGTTCGAGACCTTCGTGGATATACAGAGGGAGTACTCTTAA
- Protein Sequence
- METIVKIEREDEPEDNIDTETSVAIKTEPDDDTEINVSSDCKIPETLISNDESGDKKSSKPIKMESVLNVECVIAEDKKLEVNDYAYSALSQIEIVTITEEERQIEFQELYESRKHMNHICDKCAIGYVIKEAYDMHMKMHSPESGSYVCSLCDTYLKTEETLHRHKLRHYRRYRCMVCGVRYKDRDACAGHVSFSHAGTTFRCDQCTSEFKRPQYLKRHIEQMHLKANPMECPVCHQVFYESGWFRNHVRKHNKEVQESKQASCPVCHRHFKHKSYLRQHLLVHRAARDVTCPECSEVFINSHLLDLHYEEAHKDNFVVYQCEHCKRMYFSKGEVRSHIMWSHLQHAGGHPCTCGRMFRTPVRLREHIAVKHLGAVPPRDKHCPICDKAFANQQVLTRHVKGHKGELYPCTECGRTFRTQSYVKVHYQIVHLHMTRSEIRRQRRRKLIMVPDAAEESQQDFDEEFPCVECGKTFKTQSYVKVHYNMKHRNMSREEAKRRSKELNVADVVGPRLEQVFVKTEPQEALAVPMFETFVDIQREYS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875552;
- 90% Identity
- -
- 80% Identity
- -