Lsin026522.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990182.1:5995429-5998891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.48 65 5.4 0.3 2 22 121 141 120 143 0.88 2 18 1.2 1.6e+02 4.2 0.2 2 23 168 190 167 190 0.92 3 18 9.6e-05 0.013 17.0 0.9 2 23 213 234 212 234 0.97 4 18 0.0018 0.25 13.0 1.1 2 23 239 261 238 261 0.95 5 18 0.0063 0.86 11.3 3.2 1 23 266 289 266 289 0.97 6 18 0.045 6 8.6 4.0 1 21 298 318 298 321 0.91 7 18 0.0045 0.61 11.8 0.4 2 23 329 351 328 351 0.96 8 18 0.0012 0.16 13.6 4.0 1 23 357 379 357 379 0.98 9 18 1.5e-06 0.00021 22.7 1.4 1 23 385 407 385 407 0.99 10 18 0.019 2.6 9.8 0.2 1 23 477 500 477 500 0.92 11 18 0.038 5.1 8.9 0.0 2 23 527 549 526 549 0.95 12 18 0.011 1.5 10.5 0.1 1 23 597 619 597 619 0.95 13 18 0.0057 0.76 11.5 3.1 1 19 624 642 624 644 0.89 14 18 0.59 80 5.1 1.1 2 23 655 677 655 677 0.92 15 18 3.9e-05 0.0053 18.3 1.5 2 23 685 707 685 707 0.97 16 18 2.7e-05 0.0036 18.8 3.0 1 23 713 735 713 735 0.97 17 18 0.0002 0.026 16.1 1.6 1 23 741 763 741 763 0.99 18 18 0.00013 0.018 16.6 3.4 1 23 769 792 769 792 0.97
Sequence Information
- Coding Sequence
- ATGTTTAAGCAGAAGACTGTATGGCTTAGACATATGGAAGTTCATCATGGTGAAATCACTGTTGATAAATGCAAATCAGAGGAAGTTGAAAGGAATTATCaagatttaaatgaaaatagagTTCTTAATTCTGAAGTAGAAGATAATTCAAACAAtgatgataatttaaatttgaataggACTGAAGTTGCGTTGAAACACAGACGGGGAGTAAAAAAGATTGATGAAACTGAAGATACGACTTCTGTTGACAGGAAGAAACAACGTAAAGACCACATGTTGCAGTATCGGTTAAGTGtatctgaaatattaaaatacacaaaTGCCACACGTTTCAGTAATTGCGTTGACAGATATAATAAATGTAGTTTCTGCGATGAGTATTACTTAGACCCTTCGGAGTTGAAGAGCCATAATATCGAAAATCATAATCACGAAGACAAAAGACGTCTAACAGCAAAATGTATGGAAGGATCGTTGAAGCTGGATGTAACAAACTTGCGTTGCTTACTGTGTGATGAAAACATATCCGATTTCACGAATATGTTGAATCATTTGATTGAAAAGCATGAACGGCCGATCTCTTTGGTAGTAACTAAACATATATTGCCGTTTTCGTTCAATGACGATGTCCTGCGGTGTGTGCATTGCGAGAAAGAATTTCCTAATTACGGAATGCTTTACAAGCACATGAATATTCATTACTGCAATCTTCGATGTGATTATTGTCAGCAATGGTTTATGAACCAAAGTCAGTTGCGTAGCCATTATCGTTACGCTCACGCGCTGGGTCACTTTGAATGTAATATTTGCGAGAAAAAGTTCGATACGAAGCTTAAAATGAAAGGTCACGTTAAGATGTGCCATTTAAAACATTCGCCTAATCGTATTTATAAATGTCTGTTGTGTAACGAACAATTTACATACTATTCACACAAGCAGAAACATTTGGTTGATAAGCACGCTATTAAATCGTTTAAACAACAATGTAATGCGTGCGACAAAGTGTTTAACTCGACGCGGGCGTATCTGATCCACGTTAAAAGAGATCACTTATTGGAGAGAAAGCATAAATGCGAGCTTTGTGATAAGGAATTTTTCAGGAAAAGGGAAATGAATGATCACTATCTGAAACATACAGGACAGCGGAGCTTCCAATGTGACATCTGCAATAAATTGTTCGCCAGAAAGACGACTCTACGCAGCCATATTCAAACTCACACTAATGACAGGAAAAAATATTCTTGCACTGATTGTGCACCAAGTACCAAAAGAAAACGGAAAGATGAGATTAATGACGTCGATGATATTGTTGAAGAGAGTAATAAAGGTAAAAAGGGCCACGAGTTAAAAAAACACAGATTCAATCTGATTGAAATTTTGAGAAACTCTAATGCGACACCGATCCGATGTCGGGGCGGTATTGGGTACGCTTGCTGTTATTGTAGCGATGAATTCCCTGATCCAgccgatttaaaaaaacacacaattGCTGCACACGATGAAAACTCTAGACTAAGGCTTATGGACGGGAAGGATTTGCACAGATTTCATGCAAAACTTGACATAACGCAACTAAAATGCAATATTTGCAATCGGCCTATTGACAATATCGAGTTGTTGATAGATCATTTGAAGAATGTGCAcagtataaaaatgtatatggaCGTAAAAAATCAGTTGCTCCCGTTCAAATTCAGCGAAAACTCCCTGCAGTGTTTCATGTGTCAAAGCGTCCATCATAAATTCAAATCGCTTTTGGAGCACATGAATGTGCATTACAGAAATTTTATATGCGAAGTGTGCAACGCCGGATTTATCACGAGGTCCGTTTTGGCGCAGCATTCGAAAGCGCACGACATAGGTACGTTTAAATGCCATTACTGCGATAAAGTCTTCGATACGCTGCGGAAGAAACAGAGTCACGAGAAATGTGTACATACGCATTCAGAAGGCCTAAATAGGTGCGCGTACTGCAATGAGAAGTTTGGCGATTATAGGAAGAAGGAGACTCATCTTTTTCGAGTACACGGAGTTGTTTACACTGAGGCGAAATGCCAGGCGTGTGATAAAACTTTCCGGAGCCAAAAAGAATACACTGCCCACATAAAGCGGCTGCATCTAATGGACAGGCGTCATAGGTGCAACGAATGCGATATGTCGTTTTTCACGTCCAACGAACTGAAGAACCACATGGTGAAACATACTGGTGAGAGGATGTTTAAATGCGAGGTGTGCTTCAACAGCTATGGCCGCCGGAAGACGCTTAGGGAGCATATGCGAATACACGCGGACGATAGGAGGTTCAAGTGCGAACATTGCGGGCAGGCGTTCGTGCAGAAGTGCAGCTGGAGGGGACACATGCGAGCGAAGCACGGCGAAGAAGCGTAG
- Protein Sequence
- MFKQKTVWLRHMEVHHGEITVDKCKSEEVERNYQDLNENRVLNSEVEDNSNNDDNLNLNRTEVALKHRRGVKKIDETEDTTSVDRKKQRKDHMLQYRLSVSEILKYTNATRFSNCVDRYNKCSFCDEYYLDPSELKSHNIENHNHEDKRRLTAKCMEGSLKLDVTNLRCLLCDENISDFTNMLNHLIEKHERPISLVVTKHILPFSFNDDVLRCVHCEKEFPNYGMLYKHMNIHYCNLRCDYCQQWFMNQSQLRSHYRYAHALGHFECNICEKKFDTKLKMKGHVKMCHLKHSPNRIYKCLLCNEQFTYYSHKQKHLVDKHAIKSFKQQCNACDKVFNSTRAYLIHVKRDHLLERKHKCELCDKEFFRKREMNDHYLKHTGQRSFQCDICNKLFARKTTLRSHIQTHTNDRKKYSCTDCAPSTKRKRKDEINDVDDIVEESNKGKKGHELKKHRFNLIEILRNSNATPIRCRGGIGYACCYCSDEFPDPADLKKHTIAAHDENSRLRLMDGKDLHRFHAKLDITQLKCNICNRPIDNIELLIDHLKNVHSIKMYMDVKNQLLPFKFSENSLQCFMCQSVHHKFKSLLEHMNVHYRNFICEVCNAGFITRSVLAQHSKAHDIGTFKCHYCDKVFDTLRKKQSHEKCVHTHSEGLNRCAYCNEKFGDYRKKETHLFRVHGVVYTEAKCQACDKTFRSQKEYTAHIKRLHLMDRRHRCNECDMSFFTSNELKNHMVKHTGERMFKCEVCFNSYGRRKTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRAKHGEEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874680;
- 90% Identity
- iTF_00874680;
- 80% Identity
- -