Ljuv013940.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000014.1:11417944-11422531[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.018 2.5 10.0 0.6 2 23 36 57 35 58 0.92 2 22 3.3e-05 0.0046 18.6 4.0 1 23 87 109 87 110 0.95 3 22 5.9e-06 0.00082 20.9 0.8 1 23 114 136 114 136 0.97 4 22 9e-05 0.013 17.2 1.4 1 23 142 164 142 165 0.96 5 22 0.082 12 7.9 0.5 1 22 265 286 265 288 0.90 6 22 3.8 5.3e+02 2.7 0.1 2 23 313 335 312 335 0.91 7 22 0.00011 0.016 16.9 0.9 2 23 358 379 357 379 0.97 8 22 0.0023 0.33 12.8 1.1 2 23 384 406 383 406 0.95 9 22 0.0081 1.1 11.1 3.2 1 23 411 434 411 434 0.97 10 22 0.14 20 7.2 3.4 1 21 443 463 443 466 0.91 11 22 0.0058 0.81 11.5 0.4 2 23 474 496 473 496 0.96 12 22 0.0015 0.21 13.4 4.0 1 23 502 524 502 524 0.98 13 22 2e-06 0.00027 22.4 1.4 1 23 530 552 530 552 0.99 14 22 0.024 3.4 9.6 0.2 1 23 622 645 622 645 0.92 15 22 0.048 6.8 8.6 0.0 2 23 672 694 671 694 0.95 16 22 0.014 2 10.3 0.1 1 23 742 764 742 764 0.95 17 22 0.0072 1 11.2 3.1 1 19 769 787 769 789 0.89 18 22 0.75 1.1e+02 4.9 1.1 2 23 800 822 800 822 0.92 19 22 5e-05 0.007 18.0 1.5 2 23 830 852 830 852 0.97 20 22 3.4e-05 0.0048 18.5 3.0 1 23 858 880 858 880 0.97 21 22 1.1e-05 0.0015 20.1 2.0 1 23 886 908 886 908 0.99 22 22 0.00017 0.023 16.4 3.4 1 23 914 937 914 937 0.97
Sequence Information
- Coding Sequence
- ATGAACGTGCCCCAAACGGTCGTGAGCAAGGTGGAGACAAAAGCAAGGAATATCAGCGAGAAGTTGGATGAACATGCTGAAACACATTTAAGCATAGATGCTGTTTCCTGTAAAGATTGTGACATTACATTTAAGGAAAAGTCTATATGGCTCAGACATGTGGAGGTTCATCATGATACTGTCCACACTTATTCAGAGACTTTTTCCAGCAGCGAGAAGTTGAACAAAAATGCTGAAATACATTTAAGCAAAGATGTTTTTTCCTGTAAATATTGTGATATTACATTTAAGCAAGAGTCTGAATGGCACAAACATATGGAAGTGCATCATTATACCGTCTATACTTGTTCTGTTTGTTCAAAGACTTTTTCCAGCAGCGAGAAGTTGAACAAACATGCTGAAATACATTTAAGCAAAAATACTTATTCCTGTAAAGATTGTGATATCATGTTTAAGCAGAAGACGGTATGGCTTAGACATATGGAAGTTCATCATGGTGAAATCACTGTTGATAAATGCAAATCGGAGGAAGTTGAAAGGACTTATCaagatttaaatgaaaatagagTTCTTAATTGTGAAGTAGAAGATgatgctaatttaaatttgaataggACTGAAGTTGCGTTGAAACGCAGACGGGGAGTAAACAAGATTGATGAAACTGAAGATACGACTTCTGTTGACAGGAAGAAACAACGTAAAGACCACATGTTACAGTATCGGTTAAGTGtatctgaaatattaaaatacacaaaTGCCACACGTTTCAGTAATTGCGTTGacagatattataaatgtagtTTCTGTGATGAGTATTACTTAGACCCTTCGGAGTTGAAGAGCCATAATATCGAAAATCATAATCACGAAGACAAAAGACGTCTAACAGCAAAATGTATGGAAGGATCGTTGAAGCTGGATGTAACAGACTTGCGTTGCTTACTGTGTGATGAAAACATACCCGATTTCAAGAATATGTTGAATCATTTGATTGAAAAGCATGAACGGCCGATCTCTTTGGTAGTAACTAAACATATATTGCCGTTTTCGTTCAATGACAATGTCCTGCGGTGTGTGCATTGCGAGAAAGAATTTCCTAATTACGGAATGCTTTACAAGCACATGAATGTTCATTACTGCAATCTTCGATGTGATTATTGTCAGCAATGGTTTATGAACCAAAGTCAGTTGCGTAGCCATTATCGTTACGCTCACGCGCTGGGTCACTTTGAATGTAATATTTGCGAGAAAAAGTTCGATACGAAGCTTAAAATGAAAGGTCACGTTAAGATGTGCCATTTAAAACATTCGCCTAAGCGTATTTATAAATGTCTCTTGTGTAACGAACAATTTACATACTATACACACAAGCAGAAACATTTGGTTGATATGCACGCTATTAAATCGTTTGAACAACAATGTAATGCGTGCGACAAAGTGTTTAACTCGACGCGGGCGTATCTGATCCACGTTAAAAGAGATCACTTATTGGAGAGAAACCATAAATGCGAGCTTTGTGATAAGGAATTTTTCAGGAAAAGGGAAATGAATGATCACTATCTGAAACATACAGGACAGCGGAGCTTCCAATGTGACATCTGCAATAAATTGTTCGCCAGAAAGACGACTCTACGCAGCCATATTCAAACTCACACTAATGACAGGAAAAAATATTCTTGCACTGATTGTGCACCAAGTACCAAAAGAAAACGGAAAGATGAGATTAATGACGTCGATGATATTGTTGAAGAGAGTAATAAAGGTAAAAAGGGCCATGAGTTAAAAAAGCACAGATTCAATCTGATTGAAATTTTGAGAAACTCTAATGCGACACCGATCCGATGTCGGGGCGGTATTGGGTACGCTTGCTGTTATTGTAGCGATGAATTCCCTGATCCAgccgatttaaaaaaacacacaattgCTGCACACGATGAAAACTCTAGACTAAGGCTTATGGACGGGAAGGATTTGCACAGATTTCATGCAAAACTTGACATAACGCAACTAAAATGCAATATTTGCAATCGGCCTATTGACAATATCGAGTTGTTGATAGATCATTTGAAGAATGTGCAcagtataaaaatgtatatggaCGTAAAAAATCAGTTGCTCCCGTTCAAATTCAGCGAAAACTCCCTGCAGTGTTTCATGTGTCAAAGCGTCCATCATAAATTCAAATCGCTTTTGGAGCACATGAATGTGCATTACAGAAATTTTATATGCGAAGTGTGCAACGCCGGATTTATCACGAGGTCCGTTTTGGCGCAGCATTCGAAAGCGCACGACATAGGTACGTTTAAATGCCATTACTGCGATAAAGTCTTCGATACGCTGCGGAAGAAACAGAGTCACGAGAAATGTGTACATACGCATTCAGAAGGCCTAAATAGGTGCGCGTACTGCAATGAGAAGTTTGGCGATTATAGGAAGAAGGAGACTCATCTTTTTCGAGTACACGGAGTTGTTTACACCGAGGCGAAATGCCAGGCGTGTGATAAAACTTTCCGGAGCCAAAAAGAATACACAGCCCACATAAAGCGGCTGCATCTAATGGACAGGCGTCATAGGTGCAACGAATGCGATATGTCGTTTTTCACGTCCAACGAACTGAAGAACCATATGGTGAAACATACTGGTGAGAGGATGTTTAAATGCGAGGTGTGCTTCAAGAGTTATGGCCGCCGGAAGACGCTTAGGGAGCATATGCGAATACACGCGGACGATAGGAGGTTCAAGTGCGAACATTGCGGGCAGGCGTTCGTGCAGAAGTGCAGCTGGAGGGGACACATGCGAGCGAAGCACGGCGAAGAAGCATAG
- Protein Sequence
- MNVPQTVVSKVETKARNISEKLDEHAETHLSIDAVSCKDCDITFKEKSIWLRHVEVHHDTVHTYSETFSSSEKLNKNAEIHLSKDVFSCKYCDITFKQESEWHKHMEVHHYTVYTCSVCSKTFSSSEKLNKHAEIHLSKNTYSCKDCDIMFKQKTVWLRHMEVHHGEITVDKCKSEEVERTYQDLNENRVLNCEVEDDANLNLNRTEVALKRRRGVNKIDETEDTTSVDRKKQRKDHMLQYRLSVSEILKYTNATRFSNCVDRYYKCSFCDEYYLDPSELKSHNIENHNHEDKRRLTAKCMEGSLKLDVTDLRCLLCDENIPDFKNMLNHLIEKHERPISLVVTKHILPFSFNDNVLRCVHCEKEFPNYGMLYKHMNVHYCNLRCDYCQQWFMNQSQLRSHYRYAHALGHFECNICEKKFDTKLKMKGHVKMCHLKHSPKRIYKCLLCNEQFTYYTHKQKHLVDMHAIKSFEQQCNACDKVFNSTRAYLIHVKRDHLLERNHKCELCDKEFFRKREMNDHYLKHTGQRSFQCDICNKLFARKTTLRSHIQTHTNDRKKYSCTDCAPSTKRKRKDEINDVDDIVEESNKGKKGHELKKHRFNLIEILRNSNATPIRCRGGIGYACCYCSDEFPDPADLKKHTIAAHDENSRLRLMDGKDLHRFHAKLDITQLKCNICNRPIDNIELLIDHLKNVHSIKMYMDVKNQLLPFKFSENSLQCFMCQSVHHKFKSLLEHMNVHYRNFICEVCNAGFITRSVLAQHSKAHDIGTFKCHYCDKVFDTLRKKQSHEKCVHTHSEGLNRCAYCNEKFGDYRKKETHLFRVHGVVYTEAKCQACDKTFRSQKEYTAHIKRLHLMDRRHRCNECDMSFFTSNELKNHMVKHTGERMFKCEVCFKSYGRRKTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRAKHGEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876433;
- 90% Identity
- iTF_00876433;
- 80% Identity
- -