Basic Information

Insect: Leptidea sinapis
Gene Symbol: -
Assembly: GCA_905404315.1
Location: FR990177.1:5466916-5487679[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00085 0.11 14.1 0.5 2 23 220 241 219 241 0.95

2 11 0.0076 1 11.1 0.7 2 23 247 268 246 268 0.93

3 11 0.00073 0.099 14.3 1.2 1 23 274 296 274 296 0.96

4 11 2.3e-05 0.0031 19.0 1.4 1 23 305 327 305 327 0.97

5 11 3.6e-06 0.00049 21.5 1.5 2 23 334 355 333 355 0.97

6 11 0.00032 0.043 15.4 6.7 1 23 363 385 363 385 0.99

7 11 3.6e-08 4.8e-06 27.8 1.3 1 23 391 413 391 413 0.99

8 11 1.8e-05 0.0024 19.3 3.8 1 23 419 441 419 441 0.98

9 11 0.018 2.4 9.9 1.4 2 23 448 468 447 468 0.94

10 11 0.0023 0.3 12.7 2.9 1 23 474 496 474 496 0.92

11 11 5.9e-05 0.0079 17.7 2.8 1 23 502 524 502 524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00085	0.11	14.1	0.5	2	23	220	241	219	241	0.95
2	11	0.0076	1	11.1	0.7	2	23	247	268	246	268	0.93
3	11	0.00073	0.099	14.3	1.2	1	23	274	296	274	296	0.96
4	11	2.3e-05	0.0031	19.0	1.4	1	23	305	327	305	327	0.97
5	11	3.6e-06	0.00049	21.5	1.5	2	23	334	355	333	355	0.97
6	11	0.00032	0.043	15.4	6.7	1	23	363	385	363	385	0.99
7	11	3.6e-08	4.8e-06	27.8	1.3	1	23	391	413	391	413	0.99
8	11	1.8e-05	0.0024	19.3	3.8	1	23	419	441	419	441	0.98
9	11	0.018	2.4	9.9	1.4	2	23	448	468	447	468	0.94
10	11	0.0023	0.3	12.7	2.9	1	23	474	496	474	496	0.92
11	11	5.9e-05	0.0079	17.7	2.8	1	23	502	524	502	524	0.98

Sequence Information

Coding Sequence: atgaaagaaagaaaatctGTTGATTTGGAGGCAGAAATCCCTCTTAGTGTTCTTGTTACAAAAACATCCAAAGAACATTTAAAACCACAAAATGAGAAAACCGATAAACTTGAAGAAAACATTGAAGGTTTACAAGATTCATGCCCAGTAGTCATCGAGAGGAATAAGTTATGTCATTTTTGCTTATGCTATGGTAAAAACATTGAATCCTTATTCAGTAAAAGTGGCAGGGAAGGTGTTCTTGTTGAAATGCTGAGGTCTCTGATGTCTATTGCTTTAACATCTGAAACTGAAGTACCATCACGAATATGTGAATCCTGCAAAACTGAGATAATTAAATTCAATGAGTTCAGAAATAAATGTGTTAAGTCCATTCATGCAATACAATCGGCTTTTGAACTGCCACTGCTAGAGCTGAGAGAGTGTATGTGCAAAGGTGTAAGgacAGTTAGGAAAAAAAGTCTTGAGCTACAAACACGAACATTGAAGCCGGCGGAGGTATCAAAAGAACATAGACCAGAGGTCCAGCATGAAACAGATGCCACAGAACTGAAAACTCAAGATTCTAATATATGTGATGTGATCCAAAAGAAGGTAGGAAAGCTGAAAAACGTTAATaagCTACAATCGCCCCAGAATAAGAAAGAGAAGTCAGTTCCATGTGACAAATGCACCCGTACGTTCATATCACAACACGATCTGGACTTGCATTACGCAATACACTCAAACAGTGAATGGAAATGTATCGAGTGTCAAAAGGAGTTTGACAATCGCACACGTTTGAGTCGCCATATTGCACGACATTTCGAGCGTAAACTGCATTCGTGCGAGTGGTGCGGGAAGCAGTTTGTGGAAATGTGTGCTTTGAAACGACACATAGTCGTGCACACTGGAGAACAGGACGCTAAGAAACACAGCTGCCCTTACTGTGATAAGAGGTTCCGGTACCAGTACGAGGTGGCCGCGCACGTGTCTCGTCACACGGGCGAGCGGGCCATCGTTTGTGACGAGTGCGGCAAGAAGTTCCATGACAAGCGGCTTCTCAAGTCACACCTCAGGGTACACCTCAAGAAGGACCAGTTTCCGTACTCCTGCAAGTACTGTGACAAGCGATTTCGGCACATCTCCGCGAGGAACGTTCATCATCGCACACACACCGGCGAGAAGCCCTATGTGTGCTCATTTTGTGGCAAGCGCTTCATCCAGAACTCCAACTTGACGCTGCATCTACGAACACACACAGGCGAGAAGCCGTTCTCGTGCGACGTGTGCGGGCGCCGCTTCACCTCGTGTTCGACGCTCAACGCGcacgcacacacgcacacaaagCACAACATGTGCGAGTGTCCGACCTGCGGAAAGAAGTTGAACAGGTCAAGTCTCCCCGGCCACATGCGCCGACACTCCAGCAAAAAGCCGTTTGAATGCTGCATCTGCAAGAAGAGGTTCGTCACGGCTTCCAGACTGCGAGAGCATTCATACGAACATACCGGTGAAAGGCCATACGAATGTGCAGACTGCTCGATTAGATACAAAAAGAAGTATCATTTAGCGAGGCACTTGAAAAGTCACGAGAAGAACAGAGAGAAAAAACAAGGTAGTCATAGAAGAGAAGAGCATAACGGTGTTTATATGAAAGACGGAGAAGAGGATGAATCAAATGAAGAACAATACGATGATAGTGCTACATTACAAATAGCAGAAGATGTTCCTATGGATGTGTCACAGGAGCTGATACTTAATGATGACGGTAGTGTgaaaactgaagtggtagtggacGATTACGGATTGAATGATGAAAATACAGTATATGTGAATAATATAAGTGATTATGTGAATGGTGAAGCTCTGAATGGTCTTAATTTGGTGGTTGGTGAACAAATGTCTACTGCGCTAGTGCGCGGTGGTGGCATGCAATTGCGTAATTTGAATCGGAATATTGTAAGGATTAAATCAGGTCAGGAACTGAAAATTAATCGAGTCACAAGCAGGCGCAGCGAATATATCTTAccttaa
Protein Sequence: MKERKSVDLEAEIPLSVLVTKTSKEHLKPQNEKTDKLEENIEGLQDSCPVVIERNKLCHFCLCYGKNIESLFSKSGREGVLVEMLRSLMSIALTSETEVPSRICESCKTEIIKFNEFRNKCVKSIHAIQSAFELPLLELRECMCKGVRTVRKKSLELQTRTLKPAEVSKEHRPEVQHETDATELKTQDSNICDVIQKKVGKLKNVNKLQSPQNKKEKSVPCDKCTRTFISQHDLDLHYAIHSNSEWKCIECQKEFDNRTRLSRHIARHFERKLHSCEWCGKQFVEMCALKRHIVVHTGEQDAKKHSCPYCDKRFRYQYEVAAHVSRHTGERAIVCDECGKKFHDKRLLKSHLRVHLKKDQFPYSCKYCDKRFRHISARNVHHRTHTGEKPYVCSFCGKRFIQNSNLTLHLRTHTGEKPFSCDVCGRRFTSCSTLNAHAHTHTKHNMCECPTCGKKLNRSSLPGHMRRHSSKKPFECCICKKRFVTASRLREHSYEHTGERPYECADCSIRYKKKYHLARHLKSHEKNREKKQGSHRREEHNGVYMKDGEEDESNEEQYDDSATLQIAEDVPMDVSQELILNDDGSVKTEVVVDDYGLNDENTVYVNNISDYVNGEALNGLNLVVGEQMSTALVRGGGMQLRNLNRNIVRIKSGQELKINRVTSRRSEYILP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875557; iTF_00874691;
90% Identity: iTF_00875557; iTF_00874691;
80% Identity: -