Basic Information

Insect: Leptidea reali
Gene Symbol: -
Assembly: GCA_949711725.1
Location: CATIXN010000006.1:22546452-22566952[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00091 0.11 14.0 0.5 2 23 230 251 229 251 0.95

2 11 0.0081 1 11.0 0.7 2 23 257 278 256 278 0.93

3 11 0.00079 0.098 14.2 1.2 1 23 284 306 284 306 0.96

4 11 2.4e-05 0.003 19.0 1.4 1 23 315 337 315 337 0.97

5 11 3.9e-06 0.00048 21.5 1.5 2 23 344 365 343 365 0.97

6 11 0.00034 0.043 15.4 6.7 1 23 373 395 373 395 0.99

7 11 3.8e-08 4.8e-06 27.8 1.3 1 23 401 423 401 423 0.99

8 11 1.9e-05 0.0024 19.3 3.8 1 23 429 451 429 451 0.98

9 11 0.019 2.4 9.9 1.4 2 23 458 478 457 478 0.94

10 11 0.0024 0.3 12.7 2.9 1 23 484 506 484 506 0.92

11 11 6.3e-05 0.0078 17.7 2.8 1 23 512 534 512 534 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00091	0.11	14.0	0.5	2	23	230	251	229	251	0.95
2	11	0.0081	1	11.0	0.7	2	23	257	278	256	278	0.93
3	11	0.00079	0.098	14.2	1.2	1	23	284	306	284	306	0.96
4	11	2.4e-05	0.003	19.0	1.4	1	23	315	337	315	337	0.97
5	11	3.9e-06	0.00048	21.5	1.5	2	23	344	365	343	365	0.97
6	11	0.00034	0.043	15.4	6.7	1	23	373	395	373	395	0.99
7	11	3.8e-08	4.8e-06	27.8	1.3	1	23	401	423	401	423	0.99
8	11	1.9e-05	0.0024	19.3	3.8	1	23	429	451	429	451	0.98
9	11	0.019	2.4	9.9	1.4	2	23	458	478	457	478	0.94
10	11	0.0024	0.3	12.7	2.9	1	23	484	506	484	506	0.92
11	11	6.3e-05	0.0078	17.7	2.8	1	23	512	534	512	534	0.98

Sequence Information

Coding Sequence: ATGATTTGGGTTAAGAAAAGTGCCGATAtcatgaaagaaagaaaatctGTTGATTTGGAGGCAGAAATCCCTCTTAGTGTTCTTGTCACAAAAACATCCAAAGAACATTTAAAACCACAAAATGAGAAAACCGATAAACTTGAAGAAAACATTGAAGGTTTACAAGATTCATGCCCAGTAGTCATCGAGAGGAATAAGTTATGTCATTTTTGCTTATGCTACGGTAAAAACATTGAATCCTTATTCAGTAAAAGTGGCAGGGAAGGTGTTCTTGTTGAAATGCTGAGGTCTCTGATGTCTATTGCTTTAACATCTGAAACTGAAGTACCATCACGAATATGTGAATCCTGCAAAACTGAGATAATTAAATTCAATGAGTTCAGAAATAAATGTGTTAAGTCCATTCATGCAATACAATCGGCTTTTGAACTGCCACTGCTAGAGCTGAGAGAGTGTATGTGCAAAGGTGTAAGgacAGTTAGGAAAAAAAGTCTTGAGCTACAAACACGAACATTGAAGCCGGCGGAGGTATCAAAAGAACATAGACCAGAGGTCCAGCATGAAACAGATGCCACAGAACTGAAAACTCAAGATTCTAATATATGTGATGTGATCCAAAAGAAGTTAGGAAAGCTGAAAAACGTTAATaagCTACCATCGCCCCAGAATAAGAAAGAGAAGTCAGTTCCATGTGACAAATGCACCCGTACGTTCATATCACAACACGATCTGGACTTGCATTACGCAATACACTCAAACAGTGAATGGAAATGTATCGAGTGTCAAAAGGAGTTTGACAATCGCACACGTTTGAGTCGCCATATTGCACGACATTTCGAGCGTAAACTGCATTCGTGCGAGTGGTGCGGGAAGCAGTTTGTGGAAATGTGTGCTTTGAAACGACACATAGTCGTGCACACTGGAGAACAGGACGCTAAGAAACACAGCTGCCCTTACTGTGATAAGAGGTTCCGGTACCAGTACGAGGTGGCCGCGCACGTGTCTCGTCACACGGGCGAGCGGGCCATCGTGTGTGACGAGTGCGGCAAGAAGTTCCATGACAAGCGGCTTCTCAAGTCGCACCTCAGGGTGCACCTCAAGAAGGACCAGTTTCCGTACTCCTGCAAGTACTGTGACAAGCGATTTCGGCACATCTCCGCGAGGAACGTTCATCATCGCACACACACCGGCGAGAAGCCCTATGTGTGCTCATTTTGTGGCAAGCGCTTCATCCAGAACTCCAACTTGACGCTGCATCTACGAACACACACAGGCGAGAAGCCGTTCTCGTGCGACGTGTGCGGGCGCCGCTTCACCTCGTGTTCGACGCTCAACGCGCacgcacacacgcacacaaagCACAACATGTGCGAGTGTCCGACCTGCGGAAAGAAGTTGAACAGGTCAAGTCTCCCCGGCCACATGCGCCGACACTCCAGCAAAAAGCCGTTTGAATGCTGCATCTGCAAGAAGAGGTTCGTCACGGCTTCCAGACTGCGAGAGCATTCATACGAACATACCgGTGAAAGGCCATACGAATGTGCAGACTGCTCGATTAGATACAAAAAGAAGTATCATTTAGCGAGGCACTTGAAAAGTCACGAGAAGAACAGAGAGAAAAAACAAGGTAGTCATAGAAGAGAAGAGCATAACGGTGTTTATATGAAAGACGGAGAAGAGGATGAATCAAATGAAGAACAATACGAAGATAGTGCTACATTACAAATAGCAGAAGATGTTCCTATGGATGTGTCACAGGAGCTGATACTTAATGATGACGGTAGTGTgaaaactgaagtggtagtggacGATTACGGATTGAATGATGAAAATACAGTATATGTGAATAATATAAGTGATTATGTGAATGGTGAAGCTCTGAATGGTCTTAATTTGGTGGTTGGTGAACAAATGTCTACTGCGCTAGTGCGCGGTGGTGGCATGCAATTGCGTAATTTGAATCGGAATATTGTAAGGATTAAATCAGGTCAGGAACTGAAAATTAATCGAGTCACAAGCAGGCGCAGCGAATATATCTTAccttaa
Protein Sequence: MIWVKKSADIMKERKSVDLEAEIPLSVLVTKTSKEHLKPQNEKTDKLEENIEGLQDSCPVVIERNKLCHFCLCYGKNIESLFSKSGREGVLVEMLRSLMSIALTSETEVPSRICESCKTEIIKFNEFRNKCVKSIHAIQSAFELPLLELRECMCKGVRTVRKKSLELQTRTLKPAEVSKEHRPEVQHETDATELKTQDSNICDVIQKKLGKLKNVNKLPSPQNKKEKSVPCDKCTRTFISQHDLDLHYAIHSNSEWKCIECQKEFDNRTRLSRHIARHFERKLHSCEWCGKQFVEMCALKRHIVVHTGEQDAKKHSCPYCDKRFRYQYEVAAHVSRHTGERAIVCDECGKKFHDKRLLKSHLRVHLKKDQFPYSCKYCDKRFRHISARNVHHRTHTGEKPYVCSFCGKRFIQNSNLTLHLRTHTGEKPFSCDVCGRRFTSCSTLNAHAHTHTKHNMCECPTCGKKLNRSSLPGHMRRHSSKKPFECCICKKRFVTASRLREHSYEHTGERPYECADCSIRYKKKYHLARHLKSHEKNREKKQGSHRREEHNGVYMKDGEEDESNEEQYEDSATLQIAEDVPMDVSQELILNDDGSVKTEVVVDDYGLNDENTVYVNNISDYVNGEALNGLNLVVGEQMSTALVRGGGMQLRNLNRNIVRIKSGQELKINRVTSRRSEYILP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00876429;
90% Identity: iTF_00876429;
80% Identity: -