Lsin003584.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990155.1:2668148-2671746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00017 0.023 16.3 3.0 1 23 155 178 155 178 0.98 2 18 8.4e-05 0.011 17.2 1.5 1 23 187 210 187 210 0.96 3 18 0.0037 0.5 12.1 0.7 2 23 223 245 223 245 0.97 4 18 0.0018 0.24 13.0 2.4 1 23 254 277 254 277 0.96 5 18 2.2e-05 0.003 19.1 1.2 1 23 289 312 289 312 0.97 6 18 2.2e-05 0.0029 19.1 0.4 2 23 338 360 337 360 0.96 7 18 0.00031 0.042 15.4 1.3 2 23 370 392 369 392 0.96 8 18 0.083 11 7.8 1.6 2 21 397 416 396 417 0.92 9 18 0.00057 0.077 14.6 1.5 2 23 422 444 421 445 0.95 10 18 0.0063 0.86 11.3 1.5 3 23 454 475 453 475 0.96 11 18 0.00012 0.017 16.7 1.7 1 23 480 503 480 503 0.96 12 18 0.0031 0.41 12.3 1.9 2 23 512 534 511 535 0.92 13 18 0.013 1.7 10.4 0.7 1 23 552 575 552 575 0.91 14 18 0.064 8.6 8.2 0.1 2 23 582 603 581 603 0.95 15 18 0.017 2.3 10.0 1.8 2 23 609 630 608 630 0.97 16 18 1.2 1.6e+02 4.2 0.6 2 23 668 689 667 689 0.91 17 18 0.022 2.9 9.6 0.2 1 23 696 718 696 718 0.96 18 18 0.069 9.3 8.1 1.9 1 23 724 747 724 747 0.97
Sequence Information
- Coding Sequence
- ATGTCTACATCAATAAAAACAGAGCAAAAAGAGGGTCGGAAAGACCCTACAACATTCCTACCTGAAGAGCCAATGACATATGAAATTAaagtaaagaagaagaaaaagaaacgaAAGCAAGAAGATCCATTTAAAGATATAGAAGAGAAAGTTAAACTTCCCACTGTGATGGTGTTTGATCCATCTTCTGACACAATAGACCCAGAAGTTAATATAAAAGTGGAGAATATTGAGGTGGAGTTGGATTTTAATGATtttgCAAACACCAGCGGATTGATGGTAGAGGCCGCATACAGCGAAAACAGCCAAAGCGAGCCTGAAGTTAAATTAGAACAGGAAAACAAAGAAGCACTACTTCTCACATTTGAGGAACTTCTGAAGAGTGAATCTGTGAAATTCGAAAATGAAACAAACAACGAATATGTCATTGATTATGGCCATGAACAAAACATTGCAAGAAACTATGTCTGTAAAGTGTGCCATTTAGTCTTTCAGTCACCAAAAACATTACGAATGCACCAAAAAAGAAAACACCAAGTATTTAGAAAGTCTTTCAAACATATTTGTGACTACTGCAGCATGTCATATGAAACAAAGAATAGTTTAATTGCTCATATAAGAAGAAAGCATGGTCCTAATTCAACCCCAGATGACTTTGAGGAGAGGACTTGCGATATTTGTGCATTGGTTTTTAAAGGTATGTCCAGGCTAAGAATGCATATGAGGAGAAAGCATGGCTCTTTTGAAGATTCCTTCCAACATGTTTGTGAGCACTGTGGACTTACATACGACAAATTAAGGAGCCTGATTGTGCACGTTAAAAGAAAACATTCCGGAcatataaaaagtgaaacagGCCAATGGTATAAATGTCCCTTTTGTCCAAAGATATTTTCGAAGCGTGAAACTTACGCAAGACATGTCCAAAGAAACCATAAAGTTAATGATGATGTCAAAGAAAAAGTCgaagatgaaaaaattaatgtatttccAGACGAGAATGATGAAGTGTCTTGCACAGAATGTCCACTAGTATTTTCAAgtccaaattttttaaaattacacaTGAGAAGAAAGCACAATGCTCTAAAAGAAGATTTTCGACTTAAATGCAAAATATGCAATTTGTCTTATGATAAAATCGAAAGTCTAAAGAGACATGTACGAAGGAAGCATGATAAAGGGTCATATTGCTTTGTGTGTAATAGACAATTTGATACCAAGGAACTGTTTTTAAGTCATACACACACAAAGCAAATTATTGAATGCTCCATTTGTGGACTTATTTTCGCCTCGAGAAATGGTTTAAGTAAACATACGCGCCATTTGCATCATTCCGATGAACCTAAGAGAGTATTCTGTCATATTTGCAATGAAGGATTTTATGATAAGAGACAGTTAAAACCACATTATATGAGAGTGCATTTAAAAGTGTCGTATTCTTGCCGTTTTTGTAATAAGGTGTTCAAAGCCAAGGAAAGTTACAGAAGACACATTATAGTAAGGCACCAGAATACTTTGCCAAATAATCAAAAATGTGACCACTGTACGGAAACATTTCCTGATGAATTTGAATTGAGTAGACATGTATATTTAGTACACCATTTAAATGACGGGAAAATTATTAAGAAAGAAGACGGCGACAAAAACGGTTTTCAGTGCACAAAGTGTACGAACAATTATGATAGTTGGGAAGAGCTGCGAATACATTTTGAAGAAACTCATTATTCAAAATCCGAGAGTCAATGTCAGGACTGCGGTGAATTAGTACCTTCAAATGAATTGCAGAAACATATGCAATCTGTACATGTCAATAACTCAATGAAATGTAAGTTTTGTGAGTTCACCGCCAAAAACAGAGCGAGTATGACTCAACATATGCTGAGGCACAAGAATGCAACTACATTACATTGTCAGCAGCCTGGCTGTAGGTATAAGACTTTTTATGAAGGGGCCATGGATAAGCATAAACGGAGACATGCCTCCCAAGGCGTTAAGTTACAATGCACAAAGTGTCCATTTCAGACTATGAATAAGTATGTGTTGAAGTATCATGAAGAAGCTCATGAGAGTGGTAGTAAACGGTATGCTTGTGACCAATGTGATTATGCAACAGTGTTACCAACTAATTTAGTACAACATAAGTATAAACATTCCAAGGAAAAGAGGTTCAAATGTGAAGTATGTCCATTCGCTACAAAGTACAACACCTCTTTACGATTTCATGTAAGAAAGAAGCACTGTGatctccctagttttcactaa
- Protein Sequence
- MSTSIKTEQKEGRKDPTTFLPEEPMTYEIKVKKKKKKRKQEDPFKDIEEKVKLPTVMVFDPSSDTIDPEVNIKVENIEVELDFNDFANTSGLMVEAAYSENSQSEPEVKLEQENKEALLLTFEELLKSESVKFENETNNEYVIDYGHEQNIARNYVCKVCHLVFQSPKTLRMHQKRKHQVFRKSFKHICDYCSMSYETKNSLIAHIRRKHGPNSTPDDFEERTCDICALVFKGMSRLRMHMRRKHGSFEDSFQHVCEHCGLTYDKLRSLIVHVKRKHSGHIKSETGQWYKCPFCPKIFSKRETYARHVQRNHKVNDDVKEKVEDEKINVFPDENDEVSCTECPLVFSSPNFLKLHMRRKHNALKEDFRLKCKICNLSYDKIESLKRHVRRKHDKGSYCFVCNRQFDTKELFLSHTHTKQIIECSICGLIFASRNGLSKHTRHLHHSDEPKRVFCHICNEGFYDKRQLKPHYMRVHLKVSYSCRFCNKVFKAKESYRRHIIVRHQNTLPNNQKCDHCTETFPDEFELSRHVYLVHHLNDGKIIKKEDGDKNGFQCTKCTNNYDSWEELRIHFEETHYSKSESQCQDCGELVPSNELQKHMQSVHVNNSMKCKFCEFTAKNRASMTQHMLRHKNATTLHCQQPGCRYKTFYEGAMDKHKRRHASQGVKLQCTKCPFQTMNKYVLKYHEEAHESGSKRYACDQCDYATVLPTNLVQHKYKHSKEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPSFH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875553; iTF_00874686;
- 90% Identity
- iTF_00874686;
- 80% Identity
- -