Ljuv007257.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000006.1:19707668-19709656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00015 0.021 16.5 3.0 1 23 63 86 63 86 0.98 2 18 7.6e-05 0.011 17.4 1.5 1 23 95 118 95 118 0.96 3 18 0.0034 0.47 12.3 0.7 2 23 131 153 131 153 0.97 4 18 0.0016 0.23 13.2 2.4 1 23 162 185 162 185 0.96 5 18 2e-05 0.0028 19.3 1.2 1 23 197 220 197 220 0.97 6 18 2e-05 0.0027 19.3 0.4 2 23 246 268 245 268 0.96 7 18 0.00029 0.04 15.6 1.3 2 23 278 300 277 300 0.96 8 18 0.075 11 8.0 1.6 2 21 305 324 304 325 0.92 9 18 6.3e-05 0.0088 17.7 1.3 2 23 330 352 329 353 0.95 10 18 0.0058 0.81 11.5 1.5 3 23 362 383 361 383 0.96 11 18 0.00011 0.016 16.9 1.7 1 23 388 411 388 411 0.96 12 18 0.0028 0.39 12.5 1.9 2 23 420 442 419 443 0.92 13 18 0.012 1.6 10.6 0.7 1 23 460 483 460 483 0.91 14 18 0.058 8.1 8.4 0.1 2 23 490 511 489 511 0.95 15 18 0.016 2.2 10.2 1.8 2 23 517 538 516 538 0.97 16 18 1.1 1.5e+02 4.4 0.6 2 23 576 597 575 597 0.91 17 18 0.02 2.8 9.8 0.2 1 23 604 626 604 626 0.96 18 18 0.062 8.7 8.3 1.9 1 23 632 655 632 655 0.97
Sequence Information
- Coding Sequence
- ATGGTAGAGGCCGCATACAGCGAAAACAGCCAAAGCGAGCCTGAAGTTAAATTAGAACAGGAAAACAAAGAAGCACTACTTCTCACATTTGAGGAACTTCTGAAGAGTGAATCTGTGAAATTAGAAAATGAAACAAACAACGAATATGTCATTGATTATGGCCATGAACAAAACATTGCAAGAAATTATGTCTGTAAAGTGTGCCATTTAGTCTTTCAGTCACCAAAAACATTACGAATGCACCAAAAAAGAAAACACCAAGTATTTAGAAAGTCTTTCAAACATATTTGTGACTACTGCAGCATGTCATATGAAACAAAGAATAGTTTAATTGCTCATATAAGAAGAAAGCATGGTCCTAATTCAACCCCAGATGACTTTGAGGAGAGGACTTGCGATATTTGTGCATTGGTTTTTAAAGGCATGTCCAGGCTAAGAATGCATATGAGGAGAAAGCATGGCTCTTTTGAAGATTCCTTCCAACATGTTTGTGAGCACTGTGGACTTACATACGACAAATTAAGGAGCCTGATTGTGCACGTTAAAAGAAAACACTCCGGAcatataaaaagtgaaacaggCCAATGGTATAAATGTCCCTTTTGTCCAAAGATATTTTCGAAGCGTGAAACTTACGCAAGACATGTCCAAAGAAACCATAAAGTTAATGATGATGTCAAAGAAAAAGTCgaagatgaaaaaattaatgtatttccAGACGAGAATGATGAAGTGTCTTGCACTGAATGTCCACTAGTATTTTCAAgtccaaattttttaaaattacacaTGAGAAGAAAGCACAATGCTCTAAAAGAAGATTTTCGACTTAAATGCAAAATATGCAATTTGTCTTATGATAAAATCGAAAGTCTAAAGAGACATGTACGAAGGAAGCATGATAAAGGGTCATATTGCTTTGTGTGTAATAGACAATTTGATACCAAGGAACTGTTTTTAAGTCATACACACACAAAGCAAATTATTGAATGCTCCATATGTGGACTTATTTTCGCCTCGAGAAATGGTTTAAGTAAACATATGCGCCATTTGCATCATTCCGATGAACCTAAGAGAGTATTCTGTCATATTTGCAATGAAGGATTTTATGATAAGAGACAGTTAAAACCACATTATATGAGAGTGCATTTAAAAGTGTCGTATTCTTGCCGTTTTTGTAATAAGGTGTTCAAAGCCAAGGAAAGTTACAGAAGACACATTATAGTAAGGCACCAGAATACTTTGCCAAATAATCAAAAATGTGACCACTGTACGGAAACATTTCCTGATGAATTTGAATTGAGTAGACATGTATATTTAGTACACCATTTAAATGACGgaaaaattattaagaaagaAGACGGCGACAAAAACGGTTTTCAGTGCACAAAGTGTACGAACAATTATGATAGTTGGGAAGAGCTGCGAATACATTTTGAAGAAACTCATTATTCTAAATCCGAGAGTCAATGTCAGGACTGCGGTGAATTAGTACCTTCAAATGAATTGCAGAAACATATGCAATCTGTACATGTCAATAACTCAATGAAATGTAAGTTTTGTGAGTTCACCGCCAAAAACAGAGCGAGTATGACTCAACATATGCTGAGGCACAAGAATGCAACTACATTACATTGTCAGCAGCCTGGCTGTAGGTATAAGACTTTTTATGAAGGGGCCATGGATAAGCATAAACGGAGACATGCCTCCCAAGGTGTTAAGTTACAATGCACAAAGTGTCCGTTTCAGACTATGAATAAGTATGTGTTGAAGTATCATGAAGAAGCTCATGAGAGTGGTAGTAAACGGTATGCTTGTGACCAATGTGATTATGCAACAGTGTTACCAACTAATTTAGTACAACATAAGTATAAACATTCCAAGGAAAAGAGGTTCAAATGTGAAGTATGTCCATTCGCTACAAAGTACAACACCTCTTTACGATTTCATGTAAGAAAGAAGCACTGTgatctccctagttttcactaa
- Protein Sequence
- MVEAAYSENSQSEPEVKLEQENKEALLLTFEELLKSESVKLENETNNEYVIDYGHEQNIARNYVCKVCHLVFQSPKTLRMHQKRKHQVFRKSFKHICDYCSMSYETKNSLIAHIRRKHGPNSTPDDFEERTCDICALVFKGMSRLRMHMRRKHGSFEDSFQHVCEHCGLTYDKLRSLIVHVKRKHSGHIKSETGQWYKCPFCPKIFSKRETYARHVQRNHKVNDDVKEKVEDEKINVFPDENDEVSCTECPLVFSSPNFLKLHMRRKHNALKEDFRLKCKICNLSYDKIESLKRHVRRKHDKGSYCFVCNRQFDTKELFLSHTHTKQIIECSICGLIFASRNGLSKHMRHLHHSDEPKRVFCHICNEGFYDKRQLKPHYMRVHLKVSYSCRFCNKVFKAKESYRRHIIVRHQNTLPNNQKCDHCTETFPDEFELSRHVYLVHHLNDGKIIKKEDGDKNGFQCTKCTNNYDSWEELRIHFEETHYSKSESQCQDCGELVPSNELQKHMQSVHVNNSMKCKFCEFTAKNRASMTQHMLRHKNATTLHCQQPGCRYKTFYEGAMDKHKRRHASQGVKLQCTKCPFQTMNKYVLKYHEEAHESGSKRYACDQCDYATVLPTNLVQHKYKHSKEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPSFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876426;
- 90% Identity
- iTF_00875553; iTF_00876426;
- 80% Identity
- -