Lsin003160.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905404315.1
- Location
- FR990154.1:30525297-30550057[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.06 2.4e+03 -1.3 0.3 47 84 41 79 22 98 0.62 2 3 7.2e-73 2.9e-68 231.5 17.3 1 296 119 406 119 410 0.87 3 3 1 4.1e+04 -5.7 9.5 133 170 435 472 416 484 0.44
Sequence Information
- Coding Sequence
- ATGGCTAACGGTTCTAAGATGCCGACCCCAGAGAACACTGACGAAGAAGGTGAAGTGTTCACCGATGCAGACTTCGGTGATACAGATGATGATTTAGATCGTGATGATAATAGAATATCGAATGTTGCAATAAACGAAACTGTCAATACAGCTTTAAATACGAGTAAATCTGATTGGAATGGAACTAGAGACGAAGTTGATGACACTGTTATAGTCCTTAATCAATCCGGGAATAGTGAAATAAATGGTAGCGTGAAGAATGATTTAGATAATAGTTTGGAAACGCTGAGAGATTCCGACGATAGTGAGACCAATACTTCAATAGTTGGCATACTGGGTGGTCAGCAGAATCATGCCGAGCAACGGTTAGCGGCGCGGCGAGCGGCGCGCGCGGAGGCTCGCGAGATCCGCATGCGGGAGCTGGAGCGGCAACAGCGCGAGCAGGAGGACCATGCCGACAAGGCATACGACATGTACACAGAGACGGTGGGACGCCGCGCTGGAAGCAGGCTAGCGGCGCTCAGTCCGGGCCTGCACTCGCCCAGGCGGAGCTCCGAGGACTCTGACGAGGTCATCAGTGTCAAAGATTTGAGGcACGATCTCAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGCTAGACAATGACAAGGCGGCGCTGGGGTACCAGCTGGAGCTTATGAGGGACAGAATAGAGGAGTTGCAGGAAGAGTACGCACAGTTACAGCGTGAACACAAAGAGAAGTGCTCGAGCCACGAGCGACTAAAGCGCGAGCACGCGGCCCTCGAGCGGGAGGTGGTGGCGGCGCGAGACGCCGTGCGTGCGCGCGACGCCGCCGCAGACGCGGCAGGGTACTCGTTCGTGGAGGCGGGGGGAGTGGGGGGAGCGGGGGGAGCAGTGGGAGCGGGGGGAGTGGGCGCCGGCTTCGGAGACGTGCCGCCGCTGGCGCTGCTGTCGCACGCGGCGCGCTCGCTGCTGGACGAGGCGGGCGATGGAACCCTCGACGTGCGGTTAGAGAAGCTGGCCAGCTGTAAGACGGCTCTGGAGTCGGAGGTGCGGAAGCTGAAGCTGCAGCTGAACGAGGAACGGTCCGCCCGGCAGAATGGAGTGACGGGCGTCCACGACCGAGAGTACGAGACCGAGGTGGAGACGCTTCGGAAGTGTGTGTCCGAGGCGAAGGGCCGGGCGGCCCGGGCGGAGGCCGAGGCGGCCCTGGGCGCGGGCGCGGTGGCCCGGCTGGAGGCGCAGGTGGCGCGGCTGCGGGCGCGGCTGGAGCACCACGACCACCACGAGGAGGAGCTCAAGGGGGAGCGGCGCCGGCTGCAGCGGGAGGCGCGGGAAGCCCTGAATCGTGTGGAGGAGCTCGAAACGGAGAATAGTCACCTAACGAAACGGCTCGACAAACTGAAGAATGCAAAGTCAGCGTTACTCAAGGAGCTGTGA
- Protein Sequence
- MANGSKMPTPENTDEEGEVFTDADFGDTDDDLDRDDNRISNVAINETVNTALNTSKSDWNGTRDEVDDTVIVLNQSGNSEINGSVKNDLDNSLETLRDSDDSETNTSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRRAGSRLAALSPGLHSPRRSSEDSDEVISVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELMRDRIEELQEEYAQLQREHKEKCSSHERLKREHAALEREVVAARDAVRARDAAADAAGYSFVEAGGVGGAGGAVGAGGVGAGFGDVPPLALLSHAARSLLDEAGDGTLDVRLEKLASCKTALESEVRKLKLQLNEERSARQNGVTGVHDREYETEVETLRKCVSEAKGRAARAEAEAALGAGAVARLEAQVARLRARLEHHDHHEEELKGERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -