Lsin006574.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- Mblk-1
- Assembly
- GCA_905404315.1
- Location
- FR990157.1:8831402-8868176[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-14 1.1e-11 45.4 0.0 1 39 160 199 160 205 0.92 2 2 1.7e-18 1.7e-15 57.6 0.0 1 43 369 412 369 414 0.95
Sequence Information
- Coding Sequence
- ATGCTTAGATCGCTAAGTGAGCAATGTTACTTAATATTCAAGAGTCCCGCATCGGAATCGGATAGCAGTTCTGTGTCGGGAGCTAAAAGTCCTCCCGCGGGACCTCCGCTCCTGCAACATTTACTACAGCTACAGCTTCAAGGACAAAACCCCCAAGCCATCGCGCAGTTCCAACAGATGTTGGCTGCTCTTGCGGCTCTGGGCACCGGGCTGGTGCCGTCGGCGCTCTCTCAAGCCTGGATGATGCAGAGGCTAGCAGGAGCCAGGCCACCACTAGACGGTGTCCCCGAAGTATGTGAGAAGGTGCCTCCAAGCTCATCGCCGACGGTGGCAGAACAGCCACTAGACCTCAGCGCCAAGTCGACCTCCAGCACTAGTGGAACTCCTCCCCCGGACATCAAAGGCCACAGCCTGGACAACACGAGGTTAAAGCGCGCAGTTCTCGAAGGTTCTGGTAACAGCACTCGTCGCACGTACACAGAAGACGAGCTCCAGTCCGCATTGAGGGACATTCAGTCCGGACGACTTGGCACGAGACGCGCTGCAGTTGTCTACGGCATCCCTCGCTCCACGCTCAGAAATAAAGTCAATAAGTTTGGCCTTGCAGCTGAAACTGGCCAAGAGTCTGACCAGGACAGTGATCCTGAAAAACCAGGCACGCCATCCTCTGCACCCACACTGCCAATTCTTAAAATACCATCCTACCCTCCACCTGATGAAAAAAGTCCCTCCCCGGCCACTTCTGTCACCACGCCAGTAACGCCAATCACTCCACTACTGTCTCATCAGCCGTCGCTAAATCCTCCCTCTCAGCTACTACTACCACCCTCAGTCTTCGCAGATCCTCCTGCACCACAACATTTATTCACGTCACTAAGTGACGTCATAGCTAAGAGTATTAGTCAAAAGTTTCAACAACCATTAGAGAGACCTCAAGCGGATATGTACATGAGAGCACCGGATAGACACGTTTCTGTTATTAAAACACCGCCAGATAATCAAAGGAACTACGCAGTTCCTAGCAACTCAAAGGCGACGAACAATGGTCAACCGGCGACTGGTGGGAAAGGGACAAGGCCTAAGAGAGGCAAGTACAGGAATTACGATAGGGATAGCCTAGTAGAAGCTGTGAAAGCGGTACAGAGGGGCGAGATGTCAGTACATCGCGCAGGGTCCTACTACGGCGTTCCTCATTCTACACTGGAGTACAAAGTTAAGGAGAGGCACTTGATGCGGCCTCGGAAGCGAGAGCCAAAACCCCCACAGGATACGAAGCCACAGCCGCCGAAACCGCCTCCTAAGCCCGTTAAGCCATTTACGAATGGTATGAATGGTCCGGATAGCTATCCACCGGGTTATCCTTTCTGGCCGGGCACGGGTTTCGCGCCGCCACCAACGCCGGACTTATATACGTCGCATATGATGCGGCGTCTCCGGGGAGAGGCACCGCCAGCTAACGGGTCGTTCCTCGAGGGGATAATACGGTCGAGTCTAGAGCGGCCGGGGACGGCGATTCTGCAGCGACTGACTTCGGAACCGCGAGCGGAAGCGCCCAGCTTACTGCGGCGACTGGCTGGTGAGCCGGACGAGGAGCCCCCTGCGCGGCGCCCCCGCCTTGACTCTGACCATCAGCTTGCGGCAGAAATGCGAGAGGCAGTCCAGCGACTACGTGCCGACAAAATGCGTCCCCGCAACGGAACCCCCACGCCGCCCGGTCGGCCTCCCTCGCCACCTCTCGAAGCCCCTCAACAAGCCCCCCCACACACAGCCTAG
- Protein Sequence
- MLRSLSEQCYLIFKSPASESDSSSVSGAKSPPAGPPLLQHLLQLQLQGQNPQAIAQFQQMLAALAALGTGLVPSALSQAWMMQRLAGARPPLDGVPEVCEKVPPSSSPTVAEQPLDLSAKSTSSTSGTPPPDIKGHSLDNTRLKRAVLEGSGNSTRRTYTEDELQSALRDIQSGRLGTRRAAVVYGIPRSTLRNKVNKFGLAAETGQESDQDSDPEKPGTPSSAPTLPILKIPSYPPPDEKSPSPATSVTTPVTPITPLLSHQPSLNPPSQLLLPPSVFADPPAPQHLFTSLSDVIAKSISQKFQQPLERPQADMYMRAPDRHVSVIKTPPDNQRNYAVPSNSKATNNGQPATGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQDTKPQPPKPPPKPVKPFTNGMNGPDSYPPGYPFWPGTGFAPPPTPDLYTSHMMRRLRGEAPPANGSFLEGIIRSSLERPGTAILQRLTSEPRAEAPSLLRRLAGEPDEEPPARRPRLDSDHQLAAEMREAVQRLRADKMRPRNGTPTPPGRPPSPPLEAPQQAPPHTA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078995;
- 90% Identity
- iTF_00874370;
- 80% Identity
- iTF_00874370;