Lsin033563.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990194.1:3169384-3177616[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-11 3.3e-08 34.2 0.0 4 41 64 102 61 105 0.90 2 4 7.6e-13 7.4e-10 39.5 0.0 1 39 115 153 115 157 0.94 3 4 3.8e-15 3.7e-12 46.9 0.0 2 45 171 215 170 215 0.96 4 4 8.5e-18 8.3e-15 55.4 0.0 1 42 222 264 222 267 0.95
Sequence Information
- Coding Sequence
- ATGGAACACCACCACATATCTAGCGACAATGTCTTGGATGGTTCAGAGTTTGCTCCACTATTTGCAGTTAAAGATGAGCCTCTGTCGGACGGAGAGGGTCAACTTGCCAGCGGTGATGATACAAGTGATTCCAGTTGTAGCACATTGGAGCACACCACTAGACCAACGGCGAAGTCCTGGACCCAGCAAGATATGGATAAGGCTCTCGACGCACTCAAAAACCGTCACATGAGTCTAACTAAGgCATCAAGTACCTACGGTATTCCATCTACGACGCTCTGGCAACGAGCACACAGATTGGGTATTCATACCCCCAAAAAGGAGGGCAGTTCTAAATCGTGGAGCGAAGATGACCTTAAGTGTGCCCTTGATGCGTTGAGGAATGGAGCCATATCTGCCAATAAAGCTAGCAAAGCTTATGGAATACCCAGTAGCACGCTGTACAAGATAGCCCGGCGGGAAGGTATCCGTCTGTCCGCGCCGTTCAACGCTGCGCCCACCACGTGGCGCCGCGCCGACCTCGAGCGCGCTCTTCACGCCATCCGCTGCGGCGCCGCCACCGTGCAGCGTGCCGCCTCGCACTTCGGAATACCCACagGAACACTGTATGGGCGATGTAAACGTGAAGGTATAGAGCTATCTCGCTCTAACCCCACGCCATGGTCTGAAGATGCCATGGGGGAAGCTTTAGAAGCTGTCAGGGTTGGACAAATGTCTATTAACCAAGCGGCGATTCATTTCAACTTACCGTACTCCTCGCTCTATGGACGGTTCAAGAGATGCAAGTATCAACCGTTGCAGGAGGTTCATCCGGTAGCTCCAGAACAGACGGAGGAGCAGAGTTTTACTGAGCCGAGTGCGGGGTTCTCATTCTACGACGTCCAACACGCGCTATGTGAGGGCGAAGCGCCCGTCTTCCACGAGCAGTTCTCCCATGCGCTACATTACACACATTGCGACGTCACCAGCTGA
- Protein Sequence
- MEHHHISSDNVLDGSEFAPLFAVKDEPLSDGEGQLASGDDTSDSSCSTLEHTTRPTAKSWTQQDMDKALDALKNRHMSLTKASSTYGIPSTTLWQRAHRLGIHTPKKEGSSKSWSEDDLKCALDALRNGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTTWRRADLERALHAIRCGAATVQRAASHFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPLQEVHPVAPEQTEEQSFTEPSAGFSFYDVQHALCEGEAPVFHEQFSHALHYTHCDVTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875222;
- 90% Identity
- iTF_00875222;
- 80% Identity
- -