Lrea014680.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000011.1:13174341-13183512[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.1e-11 8.8e-08 32.8 0.0 4 41 121 159 118 162 0.90 2 4 7.2e-13 9e-10 39.2 0.0 1 39 172 210 172 214 0.94 3 4 3.6e-15 4.5e-12 46.6 0.0 2 45 228 272 227 272 0.96 4 4 8.2e-18 1e-14 55.1 0.0 1 42 279 321 279 324 0.95
Sequence Information
- Coding Sequence
- ATGGTAAACTATTATCAGTTTTCAGGGGAGGAGCTGGTGGCGGTTCCAGCGGCCCCCACGGCTACTCCCGTCGGCGAGGACCTCCCAGCCCCCAGCGACACCTCTCTGGCGATGTTGCAGCCGGCCAAGAATGCTGCGGTGGGTAGCCGGCCCGTTCACACCGTTGATCAGATGATGGAACACCACCACATATCTAGCGACAATGTCTTGGATGGTTCAGAGTTTGCTCTATTTGCAGTTAAAGATGAGCCTCTGTCGGATGGAGAGGGTCAACTTGCCAGCGGTGATGATACAAGTGATTCCAGTTGTAGCACATTGGAGCACACCACTAGACCAACGGCGAAGTCCTGGACCCAGCAAGATATGGATAAGGCTCTCGACGCACTCAAAAACCGTCACATGAGTCTAACTAAGgCATCAGGTACCTACGGTATTCCATCTACGACGCTCTGGCAACGAGCACACAGATTGGGTATTCATACCCCCAAAAAGGAGGGCAGTTCTAAATCGTGGAGCGAAGATGACCTTAAGTGTGCCCTTGATGCGTTGAGGAATGGAGCCATATCTGCCAATAAAGCTAGCAAAGCTTATGGAATACCCAGTAGCACGCTGTACAAGATAGCCCGGCGGGAAGGTATCCGCCTGTCCGCGCCGTTCAACGCTGCGCCCACCACGTGGCGCCGCGCCGACCTCGAGCGCGCTCTTCACGCCATCCGCTGCGGCGCCGCCACCGTGCAGCGTGCCGCCTCGCACTTCGGAATACCCACagGAACACTGTATGGGCGATGTAAACGTGAAGGTATAGAGCTATCCCGCTCTAACCCCACGCCATGGTCTGAAGATGCCATGGGGGAGGCTTTAGAAGCTGTCAGGGTTGGACAAATGTCTATTAACCAAGCGGCGATTCATTTCAACTTGCCGTACTCCTCGCTCTATGGACGGTTCAAGAGATGCAAGTATCAACCGTTGCAGGAGGTTCATCCGGTAGCTCCAGAACAGACGGAGGAGCAGAGTTTTACTGAGCCGAGTGCGGGGTTCTCATTCTACGACGTCCAACACGCGCTATGTGAGGGCGAAGCGCCCGTCTTCTACGAGCAGTTCTCCCATGCGCTACATTACACACATTGCGACGTCACCAGCTGA
- Protein Sequence
- MVNYYQFSGEELVAVPAAPTATPVGEDLPAPSDTSLAMLQPAKNAAVGSRPVHTVDQMMEHHHISSDNVLDGSEFALFAVKDEPLSDGEGQLASGDDTSDSSCSTLEHTTRPTAKSWTQQDMDKALDALKNRHMSLTKASGTYGIPSTTLWQRAHRLGIHTPKKEGSSKSWSEDDLKCALDALRNGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTTWRRADLERALHAIRCGAATVQRAASHFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPLQEVHPVAPEQTEEQSFTEPSAGFSFYDVQHALCEGEAPVFYEQFSHALHYTHCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876072;
- 90% Identity
- iTF_00876072;
- 80% Identity
- -