Lsin000128.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- JARID2
- Assembly
- GCA_905404315.1
- Location
- FR990153.1:1272834-1299560[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 4.8e-14 53.6 0.1 7 88 378 456 374 457 0.91 2 2 5.5 2.3e+04 -3.0 0.0 35 64 710 739 709 745 0.77
Sequence Information
- Coding Sequence
- atgTTGTTCATAGCTGGTGCCGCAGCTGCAAGCCGCAAGTCCAATAACCAGTTCTTCGTGGAATTAAATAGAGCAGAAGTGGCAAATTTCATGGACACGAAGGGTTTCGATTCAGACGCGCGCCAAGCAAATCACCTCTCCGGTATATCAATGGCAACAAATACATCAACTGACGAAGTAACAGACCGAAGCGAAGAAGAACGCTACAAGGTTACATCAATGGAAAATAATGCATCCACTCTCTTATTAACAGACCTGCGTCAAGCAGAGTCATATACCCTGAATGCACCAAACCAATGGAGTGCAGCAAGGGTTAAAACCCCATCGCCTGTCGCATTAACAAATCCAGCCGTAAACCAAAACATCCCGGGCTCATTAAGGTCTTGTATTCCTGTTAATAATGAGATGAGTTCGCAGACATGTGCTTCAAATTCTATCAAAACTATGAAGCAATTGTTATCTGAGTGGGATAAAATTAAACACAATATTTGCAAGAGTTGCCCAAAATGTAATATGCTcttattgctggatgaaattatcaaacaatttaacacaaaGTTCGGCTTTGATGTACCCCAGTTCAGCACGCCGACGATATCGGATATAATCGACTTAACCTTGGATGACTGTGATAATGGTGAAGATATAATCAACATTTCTGGGCGCTATGCTTCGTACGTTCGAGAGATTAACGATGTGCTTAATAAGACCTTAAAACAAGAGCAACCAGATTCTTTGAATATAGAAGATACAGAAAATAACGGGAATCTTCAATATACAGAAAATTCAAGTAATGATATTAATATTGATGCACATGATGGAtccaataaaagatttaataattCAGTACCCATTACAATTACTAACCCTCTTCCACCATTGGGTGAAAAGGAACAAAGGGCTAATACAATACAAGAGGCCCCAGTTTGGTCTCCGACAGCGGAGGAGTTTAAGGACCCTATGAAATACATCGAACATATAACGAAGCAATGTACCCAAGGTATGTTGAAGGTGGTGCCACCCCCACAATTCAAGCCTCCGTGCCAGCTCGGGGGTCCAATACATTTTACCGTGGTGCTGCATTATATATCGCGCATGTATAAGCGCTGGACGCCCATTACCAAGGAAATAACTACAATGAGAGCATACCTTGCGTCGCAAGGTGTCCAGATCGGCCGACCACCTTTTATCAAAGGTATTCAAGTGGACCTACCGAAATTAATGAACACTATTGAAAAGAATGGGGGATTCCGCAATATGCAGACTAAACAGCAGTGGGACAAGGTTGCGCAGGCGATGAATTACACTAGCCTGCGCAATCCGCAAAAGCGACTCGACCAGATGTATGTAAGGCATATATTGCCTTATGCGACCTTGTCGTCAGATGAACGAGAAACATGGTTGGATTCCGTTGATAAAGTATGGCAAAAGCGCTACGAAGCTCTGCTGTTCAGATCCGAAAACCCTCTTCGCAGGGGAGAGAATATATTAGATGGCAGAGAGATGCCGCCCAGAGATGAATACACTGACAAggaagcaaaattattaaaacatatagCGGAGATCGAAGAATGCATAGTGCGGGACAGAATTATGAATCTGAACTCTTTTAAAAGGATTGCGGCTACTGCAAATGAATTATTCCTTGGAGACGCGAATACGCCCTCTGCAGAAGACGTCGAGATCGTCTATTGGGATATAGTAACCAGTGGCAAGGAGCACGTGTGCGTCTGCGGAGCGTCTGTAGACACTAGTGACGGGGGTCATGGCTTTCCCCTCAAATGTAAGCCGTATTGCGACAGCGCCTGGAACCTCAAGTTCTTCAAGAATCTTCCTGGAAACTTATTGGGCGTCCTTGGTGATGTGCCCGGCGTCACGGTGACGACATTGCACCTGGAAATGGCATTTTCCACAAGCTGTTGGCATCGGGACCCTCATGGCTTGCCCTGGATTGAATATCTACACACCGGAGCCGATAAAATATGgtaCAGCCTTCCTGAAGAGGAAAACGAAAATTTCAGAAGAGTTGTGAAGAAATATTGCCCTCATATTTGCCAGAATAAATCAGTATGGCTTCCTTCCGACATGGTTATGATCCCACCGGAAGTCCTACTACAAGAGGGTGTCAAGCTGACCCGCACGGTACAGAAACCGGGCGAGTATGTGATTGTCTGCCCCAGGGCCTACACATGCTCGGTGGCCACCGGCTTCTCGGTCTCCGAGAGCGTGTACTTCGCACTCTATTCCTCCGTAGGAATCATCGTTAGCTCGTTCGGAGTTGTATTGGAACCACTCACACAGTTGATCGAGATCTTCTTGCGTATGTTAGGTAATGTCATGAATCGAGGATCCAAAATAAAATAG
- Protein Sequence
- MLFIAGAAAASRKSNNQFFVELNRAEVANFMDTKGFDSDARQANHLSGISMATNTSTDEVTDRSEEERYKVTSMENNASTLLLTDLRQAESYTLNAPNQWSAARVKTPSPVALTNPAVNQNIPGSLRSCIPVNNEMSSQTCASNSIKTMKQLLSEWDKIKHNICKSCPKCNMLLLLDEIIKQFNTKFGFDVPQFSTPTISDIIDLTLDDCDNGEDIINISGRYASYVREINDVLNKTLKQEQPDSLNIEDTENNGNLQYTENSSNDINIDAHDGSNKRFNNSVPITITNPLPPLGEKEQRANTIQEAPVWSPTAEEFKDPMKYIEHITKQCTQGMLKVVPPPQFKPPCQLGGPIHFTVVLHYISRMYKRWTPITKEITTMRAYLASQGVQIGRPPFIKGIQVDLPKLMNTIEKNGGFRNMQTKQQWDKVAQAMNYTSLRNPQKRLDQMYVRHILPYATLSSDERETWLDSVDKVWQKRYEALLFRSENPLRRGENILDGREMPPRDEYTDKEAKLLKHIAEIEECIVRDRIMNLNSFKRIAATANELFLGDANTPSAEDVEIVYWDIVTSGKEHVCVCGASVDTSDGGHGFPLKCKPYCDSAWNLKFFKNLPGNLLGVLGDVPGVTVTTLHLEMAFSTSCWHRDPHGLPWIEYLHTGADKIWYSLPEEENENFRRVVKKYCPHICQNKSVWLPSDMVMIPPEVLLQEGVKLTRTVQKPGEYVIVCPRAYTCSVATGFSVSESVYFALYSSVGIIVSSFGVVLEPLTQLIEIFLRMLGNVMNRGSKIK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875088;
- 90% Identity
- iTF_00875088;
- 80% Identity
- -