Lsin026025.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990182.1:3057405-3060707[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.4 2.8e+04 -3.1 0.1 61 68 28 35 25 36 0.87 2 22 0.16 1.3e+03 1.2 0.0 50 68 64 83 60 84 0.85 3 22 0.16 1.3e+03 1.2 0.0 50 68 112 131 108 132 0.85 4 22 0.16 1.3e+03 1.2 0.0 50 68 160 179 156 180 0.85 5 22 0.16 1.3e+03 1.2 0.0 50 68 208 227 204 228 0.85 6 22 0.16 1.3e+03 1.2 0.0 50 68 256 275 252 276 0.85 7 22 0.16 1.3e+03 1.2 0.0 50 68 304 323 300 324 0.85 8 22 0.16 1.3e+03 1.2 0.0 50 68 352 371 348 372 0.85 9 22 0.16 1.3e+03 1.2 0.0 50 68 400 419 396 420 0.85 10 22 0.16 1.3e+03 1.2 0.0 50 68 448 467 444 468 0.85 11 22 0.16 1.3e+03 1.2 0.0 50 68 496 515 492 516 0.85 12 22 0.16 1.3e+03 1.2 0.0 50 68 550 569 546 570 0.85 13 22 0.16 1.3e+03 1.2 0.0 50 68 598 617 594 618 0.85 14 22 0.15 1.3e+03 1.3 0.0 50 68 646 665 642 667 0.85 15 22 0.16 1.3e+03 1.2 0.0 50 68 694 713 690 714 0.85 16 22 0.16 1.3e+03 1.2 0.0 50 68 742 761 738 762 0.85 17 22 0.16 1.3e+03 1.2 0.0 50 68 790 809 786 810 0.85 18 22 0.15 1.3e+03 1.3 0.0 50 68 838 857 834 859 0.85 19 22 0.16 1.3e+03 1.2 0.0 50 68 886 905 882 906 0.85 20 22 0.16 1.3e+03 1.2 0.0 50 68 934 953 930 954 0.85 21 22 0.16 1.3e+03 1.2 0.0 50 68 982 1001 978 1002 0.85 22 22 0.83 6.8e+03 -1.1 0.0 50 67 1030 1048 1028 1049 0.82
Sequence Information
- Coding Sequence
- ATGAATACGCCGACGAACTTGCAAGAATTGGTGCTAAAACCACTCAATTTGTCCAAGAGCGCCTGCCTGTTTGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGACTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGACTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACTCAGGCTCGCTCCTGCCTGTGTCCGTGTGTCAGTACCTGCTGCCGCCGCTGCAGGTGCTGCCGGTCCGCGAGCGCCTGCCGGTCGCGGTGCGCGCCGTGCACGCGCCGCAGCACGCCGTCGCCCGCCTCGGCCAACGCGGCCACGAAGGCTCGCTCGCGAGCCGCGTGCTCGGCGTCGAGGCGCGCGCGCCGCTCTCGGTACGCGTCCTTGCGCCGCTCCTTCGACACGAGCTCCACCTCCTGTCGCCACATCAACACACATTCTCTTACTATTACTGGTGGAATTTAACACACTTAAGCTGA
- Protein Sequence
- MNTPTNLQELVLKPLNLSKSACLFAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLTVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLTVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHSGSLLPVSVCQYLLPPLQVLPVRERLPVAVRAVHAPQHAVARLGQRGHEGSLASRVLGVEARAPLSVRVLAPLLRHELHLLSPHQHTFSYYYWWNLTHLS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -