Lrea003260.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000002.1:29995031-30008418[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-48 1.1e-43 150.8 25.3 1 175 24 191 24 196 0.82 2 2 0.016 6.2e+02 0.6 0.7 213 238 191 215 181 216 0.63
Sequence Information
- Coding Sequence
- ATGATGTATTATAAAGGTGTGGAATGCGGCACGTTGGACGATTTTGAGAATATGTCGAGTGACAGTGCGGCCGAGCAACGGTTAGCGGCGCGGCGAGCGGCGCGCGCGGAGGCTCGCGAGATCCGCATGCGGGAGCTGGAGCGGCAACAGCGCGAGCAGGAGGACCATGCCGACAAGGCATACGACATGTACACAGAGACGGTGGGACGCCGCGCTGGAAGCAGGCTAGCGGCGCTCAGTCCGGGCCTGCACTCGCCCAGGCGGAGCTCCGAGGACTCTGACGAGGTCATCAGTGTCAAAGATTTGAGGcACGATCTCAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGCTAGACAATGACAAGGCGGCGCTGGGGTACCAGCTGGAGCTTATGAGGGACAGAATCGAGGAGTTGCAGGAGGAGTACGCACAGTTACAGGTGGCGCGGCTGCGGGCGCGGCTGGAGCACCACGACCACCACGAGGAGGAGCTCAAGGGGGAGCGGCGCCGGCTGCAGCGGGAGGCGCGGGAAGCCCTGAATCGTGTGGAGGAGCTCGAAACGGAGAATAGTCACCTAACGAAACGGCTCGACAAACTGAAGAATGCAAAGTCAGCGTTACTCAAGGAGCTGTGA
- Protein Sequence
- MMYYKGVECGTLDDFENMSSDSAAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRRAGSRLAALSPGLHSPRRSSEDSDEVISVKDLRHDLKEVEEKFRKAMILNAQLDNDKAALGYQLELMRDRIEELQEEYAQLQVARLRARLEHHDHHEEELKGERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -