Lrea027623.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000025.1:9404382-9404858[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-09 1.9e-06 28.5 0.1 3 37 17 51 15 55 0.95
Sequence Information
- Coding Sequence
- ATGGTACGGACGTATAAGAAGAAAAGTTCGAGACTTACTTGGTCCATTGAAAACATGAAACAGGCAATTGATGCAGTCTTAAGCAAAACTGCTGGCTATAGAAATGCGGCTCACCTGTATAGCGTACCCCAGACCACATTAGAGCGTCACGTTGCTAAAATAAGGAAAGGCGAGCTGCCTCTTGACTCTACTCCAGGTAACTTCAAGCCCGTGTTTTCCAAACAAGAAGAAGAGGAGCTGGTTAGGTACATTATAGAAATGGAGAAACGTTTGTTTGGTTTAACCACTATCGTCCTACGGAAGCTAGCTTATCAGCTAGCGGAAAAAAATGGCAAAGCTAACAATTTTAATCGTGATAAAAAGATAGCTGGCGTAGATTGGTTAAAGGGATTTTTGAAGCGCCACCCAGATCTATCTATCCGAAAACCGGAAGCTACATCGGCAGCTCGAGCAATGGGCGTAATAAAGTGGCTGTGA
- Protein Sequence
- MVRTYKKKSSRLTWSIENMKQAIDAVLSKTAGYRNAAHLYSVPQTTLERHVAKIRKGELPLDSTPGNFKPVFSKQEEEELVRYIIEMEKRLFGLTTIVLRKLAYQLAEKNGKANNFNRDKKIAGVDWLKGFLKRHPDLSIRKPEATSAARAMGVIKWL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01375720; iTF_00281132; iTF_00951728; iTF_01153786; iTF_00147278; iTF_00064353; iTF_01157636; iTF_00147279; iTF_01340021; iTF_01375703; iTF_00441425;
- 90% Identity
- iTF_01153786;
- 80% Identity
- -