Dmen018309.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421317.1:8338946-8339383[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-11 6.8e-08 33.5 0.1 3 37 17 51 15 60 0.94 2 2 7.7 1.2e+04 -2.5 0.0 24 35 90 101 90 106 0.76
Sequence Information
- Coding Sequence
- ATGGTACGGACGTATAAGAAGAAAAGTTCGAGACTTAGTTGGTCCGTGGAAAACATGAAACAGGCAATTGATGCAGTCTTAAGCAAAACTGCTGGCTATAGAAAAGCAGCTCACCTGTATAGTGTACCACAGACCACATTAGAGCGTCACGTTGCTAAAATAAGGAAAGGCGAGGTGTCTCTTGACTCTACTCCAGGTAACTTGAAGCCCGTGTTTTCCAAACAAGAAGAACAGGAGCTGGTAAGGTACATTATAGAAATGGAGAAACGTTTGTTTGGTTTAACCACTAGCGTCCTACGGAAGCTAGCTTATCAGCTAGCCGCAAAAAATGGCAAAGCTCACAATTTTAATGCAGATAAAAAGATAGCTGGCGTAGATTGGTTAAAGGGATTCTTAAAGCGCCACCCAGATTTATCCATCAGAAAACCGGAAGCTTAA
- Protein Sequence
- MVRTYKKKSSRLSWSVENMKQAIDAVLSKTAGYRKAAHLYSVPQTTLERHVAKIRKGEVSLDSTPGNLKPVFSKQEEQELVRYIIEMEKRLFGLTTSVLRKLAYQLAAKNGKAHNFNADKKIAGVDWLKGFLKRHPDLSIRKPEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875237;
- 90% Identity
- iTF_01153786;
- 80% Identity
- -