Lrea000389.2
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- bab1
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000001.1:9502574-9512163[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-17 2.5e-14 53.8 0.0 1 43 76 119 76 121 0.95 2 2 5.8 7.2e+03 -2.1 1.6 6 15 215 224 211 226 0.83
Sequence Information
- Coding Sequence
- atgaaaaatattttggaatgtcTGATACAGTATGAACTAAATACCGAATATAATACGGCTAAGATTCTCGAGAATTCTCATGCTTGGCTGGGAGCTTCTACATCTTCACTGGCAGtagaCACCTACCAGTATCAGCTTCAGTCGATATGGCAGAAATGCTGGAACACCAACCAGAGCTTGGTGCATAACCTCCGCTTCCGCGAACGTGGACCCCTGAAGTCCTGGCGCCCAGAGACCATGGCAGAGGCTATATTCTCGGTGCTGAAAGAGGGTCTGTCCCTCTCACAAGCGGCACGCAAATACGACATACCATACCCGACTTTCGTTCTTTATGCCAACCGTGTCCACAACATGTTGGGACCCAGTGCAGATGGCGGTACAGATCTGAGACCAAAGGGTCGTGGACGGCCCCAACGCATCTTGTTGGGCGTGTGGCCAGACGAACACATTCGCGGAGTGATAAGGGCTGTGGTCTTCCGTGACTCTCACGCCACGCATGCGGCGCACGCTGCTCACCACATCAAGGAGGAAGTGCTGCCCGTGTACCCCCAAATTACGGATGGTTTGACGGTGGGACAGAGTCCTTACCCGGTAGGATGCGGCAACGGGCGTGAGGGGGGAGTGTCGCCCAACGCGGCTGCTGCTGCTGCCGTGGCGGCCGTGGCTCATGGGCTGCGGCGCCAGATGTGCACCATGGTGGTGGCTGCCCAGCGGCCCGGGGAGCATCCTCCGCACCTGGGGATGCCGCCTCTGCCCATGCAATCGCCCCGCCTACCCTCGCCGCGCCTGCCGTCGCCGCGCCTGCCCTCTCCCCTCTCTACCGGCATGGAATCTCCGCTGTGCTCGCCCGCACCACCTGGACATGCGCTGGAGCCCCCTAAGTCCGCAGATCCATTCCGCCCCTTCGTCTCTCCCCGCCCGGACCACCGCTACCGCGAGCGCGATGTGGAGATCACTGACATGGGCCCCCCGAAGACCCCGATGTCGCTCGCCAAGAACGGCAAGGATCTGGTAATGCCCGTCAAGCTGGAGCCGGCAGGAGAGCCTCGCGCGGACATCTGA
- Protein Sequence
- MKNILECLIQYELNTEYNTAKILENSHAWLGASTSSLAVDTYQYQLQSIWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHATHAAHAAHHIKEEVLPVYPQITDGLTVGQSPYPVGCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCTMVVAAQRPGEHPPHLGMPPLPMQSPRLPSPRLPSPRLPSPLSTGMESPLCSPAPPGHALEPPKSADPFRPFVSPRPDHRYRERDVEITDMGPPKTPMSLAKNGKDLVMPVKLEPAGEPRADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874374; iTF_00876075;
- 90% Identity
- iTF_00874374; iTF_00876075;
- 80% Identity
- -