Ljuv000314.2
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- bab1
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000001.1:8128512-8138032[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-17 2.9e-14 53.7 0.0 1 43 83 126 83 128 0.95 2 2 9.5 8.3e+03 -2.1 1.6 6 15 222 231 218 233 0.83
Sequence Information
- Coding Sequence
- ATGATGGTTGAGATACgcaatatgaaaaatattttgaaatgtctCATACAGTATGAACTAAATACCGAATATCATACGGCTAAGATTCTCGAGAATTCTCATGCTTGGCTGGGAGCTTCTACATCTTCACTGGCAGtagaCACCTACCAGTATCAGCTTCAGTCGATATGGCAGAAATGCTGGAACACCAACCAGAGCTTGGTGCACAACCTACGCTTCCGCGAGCGTGGACCCCTGAAGTCCTGGCGCCCAGAGACCATGGCAGAGGCTATATTCTCGGTGCTGAAAGAGGGTCTGTCCCTCTCACAAGCGGCACGCAAATACGACATACCATACCCGACTTTCGTTCTTTATGCCAACCGCGTCCACAACATGTTGGGACCCAGTGCAGATGGCGGTACAGATCTGAGACCAAAGGGTCGTGGACGGCCCCAACGCATCTTGTTGGGCGTGTGGCCAGACGAACACATTCGCGGAGTGATAAGGGCTGTGGTCTTCCGTGACTCTCACGCCACGCATGCGGCGCACGCTGCTCACCACATCAAGGAGGAAGTGCTGCCCGTGTACCCCCAAATTACGGATGGTTTGACGGTGGGACAGAGTCCTTACCCGGTAGGATGCGGCAACGGGCGTGAGGGCGGAGTGTCGCCCAACGCGGCTGCTGCTGCTGCCGTGGCGGCCGTGGCTCATGGGCTGCGGCGCCAGATGTGCACCATGGTGGTGGCTGCCCAGCGGCCCGGAGAGCATCCTCCGCACCTGGGGATGCCGCCTCTGCCCATGCAATCGCCCCGCCTACCCTCGCCGCGCCTGCCGTCGCCGCGCCTGCCCTCTCCCCTCTCTACCGGCATGGAATCTCCGCTGTGCTCGCCCGCACCACCTGGACATGCGCTGGAGCCCCCTAAGTCCGCAGATCCATTCCGCCCCTTCGTCTCTCCCCGCCCGGACCACCGCTACCGCGAGCGTGATGTGGAGATCACTGACATGGGCCCCCCGAAGACCCCGATGTCGCTCGCCAAGAACGGCAAGGATCTGGTAATGCCCGTCAAGCTGGAGCCGGCAGGAGAGCCTCGCGCGGACATCTGA
- Protein Sequence
- MMVEIRNMKNILKCLIQYELNTEYHTAKILENSHAWLGASTSSLAVDTYQYQLQSIWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHATHAAHAAHHIKEEVLPVYPQITDGLTVGQSPYPVGCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCTMVVAAQRPGEHPPHLGMPPLPMQSPRLPSPRLPSPRLPSPLSTGMESPLCSPAPPGHALEPPKSADPFRPFVSPRPDHRYRERDVEITDMGPPKTPMSLAKNGKDLVMPVKLEPAGEPRADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875225;
- 90% Identity
- iTF_00875225;
- 80% Identity
- -