Ljuv019644.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- ZFX
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000023.1:3884634-3902428[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 4.2e+02 3.0 0.3 2 23 6 27 5 27 0.95 2 13 0.00072 0.1 14.4 1.5 1 23 1019 1042 1019 1042 0.94 3 13 1.7e-06 0.00025 22.6 1.4 2 23 1142 1163 1141 1163 0.97 4 13 3.7e-05 0.0052 18.4 1.7 1 23 1169 1191 1169 1191 0.98 5 13 7.9e-05 0.011 17.4 3.0 2 23 1198 1219 1197 1220 0.95 6 13 0.0065 0.92 11.4 0.6 1 23 1230 1252 1230 1252 0.98 7 13 0.012 1.7 10.5 0.7 3 23 1259 1280 1258 1280 0.96 8 13 0.22 32 6.5 2.2 3 23 1298 1317 1296 1317 0.96 9 13 0.0002 0.028 16.1 1.0 1 20 1323 1342 1323 1345 0.89 10 13 0.00086 0.12 14.1 1.3 1 23 1353 1375 1353 1375 0.98 11 13 0.0052 0.73 11.7 7.2 1 23 1381 1403 1381 1403 0.98 12 13 0.00011 0.015 17.0 1.0 1 23 1409 1433 1409 1433 0.97 13 13 0.00037 0.052 15.3 2.3 1 23 1439 1461 1439 1461 0.97
Sequence Information
- Coding Sequence
- atggatCAAAGGGTTCAATGCCCTGTTTGTACATTATACCTTCACAATGGGATGTCATTGGAGTCTCATTTGGATACTCACCCAAAAGATCAGGTGATAAAAGCACTTTGCAGTTTATCTGCCAAAAAATCTAATGATTCAACAGTTACACTAACACCAAGTAGCTCAGAGGGATCTTACAGAAGCAGAACACCTTTAACAGATGATAGTGTAAGATGGTCAACCTCCAGACGGAGCACAGATAGTGGATACTGGCCTAGAACCCCTAGTAGAAATAAATCAGCATCATCAAATGTCTCCAGTAACTGTAATCCTGAACTTCAAAGTGGTGCATCTCATTTtgagaataatttaataaataacagtgcTGAATTCTCAGACTGTGAGGTGAAATCTGTCAAGAGCTCAAATGCATTTACTCCAAATGTTCACCTAACAACTGATTACAACCAACAATATCCATTCTATTCTGAAAATCCCGATGAGAGTGAAGTTAAGTATTCACGAAGTACTGATTATAATGTTACTGATAATGGAAACCAAATTTTTACATATAATGTACCAATTGTAGGTAATATGAAACTACCACCCAGAATTGTACCTGCAAATGCAACAAGAGGaaacaacaatttcattaaatttataccaaaatcAAACAATATGATGGTTAAAAACATTGGAGGTGTAAGATACATGGCACCTAGTGTAAAACCATATTCGATGATGTTTTCTGGAAATAGCATGGGATCAGATATTTTAAGTCCAAAAAACCTAAGTCAGCCAATAGATGGTCAGTTTAATCAAATGGCCCATGAAGGAATAGCACCAAATGCAACTTCTGTTACACAAAATTCACAAATTATCTACAGGGAGATGGTTCACAGTGTTGATGGCAAACCTTATATTTCTAATGTTCCACAGATGCTGAATGGTAATGATAATGCAGCACAAAACAGCTCAATGTATCAAAATATGATGGTTATTGACCAGTTTGGTAATACATCTTGTATGTACAATACACCACCATCTAATTCTATGACTAAAGCTGAGCCAGTCTCCAATGAGTCAAACAAGACCTTGATAATTGAAGTGAGCCCCATGTCAGCAACGGATGAGAAATATATAAAACCAGAAATACTTAATAACCCCACCACTACAGTATCAGATAAATTACATACTTCATTACCCAGCTCTTGTAAAGGTTTGAAAATTCTTAGTAATATTAAAGTTGAGGTTCCTGTTAAGCATCACAAATATATGGTCAACACTGTGATGGATCTCACTGAATCTGATGAGTTGAGCTATGTTCAAAGGACTCCATCACCTGAAAATAGTTTGCTAGATTTAGAAGAGAAGAAAGAAATTCCAAAACTAACTGATGATTGTGCTCAGCCATGTACCTCAAGCAATGACAGTTTAATAACTAATTCATTATCAGTTATAAAAAATGTGGGAAAGTTGCATCCTGAAGATGTTTCTATTAAAGAAGATAAAATGGAAGATGAATTTTCTGACAGTTGTCCAGTACCTGATCTTATTTGTAATGAAAAACCATCTATATCTCCATGTAGTGAATTGTTGGAAAACAGTGAAAACTCTATGGATCAAATAACATCAACTAAGCCTGATCCgtcaatcaaaattgattccaaaGATGAATTGACTAGTTCACttgaaatcaaaattgattccaaaGATGAATTGACTAGTTCACTTGAATTGTTAGCTGGTAACAATAAACTGGATCATTACAGTCCTGACACAAGTTCAGATTTCAAAACAAAAAGTGAAATTTATAAATCAGGGTTGGATGCAGAAGATCTAACATCCGGATCTAGTTCTCGATTAAGTGTTTCACCAAGTCCAGACCCTTCCATACCAGAATCATCTAGACAAGATTCAACATTGAAGTCTGAGTCACCCAGATCctctattaatttaaatcttcaAGAGGAACGCAAGGTACGAAACCCACCAAAGCCTCGTAATATACCATTaagtttgaataatatatttgttaaaaagcacaaaaaaattcttaaaataaaaaataaaaaatttgcttCAAAAGTAGTCCAACCTAAACAAGAACCACAGCCATCTTCTTCAAATACTGTGCcagtagaaatattttttgattcaaGTGTTGTAAAGAAATCTGAAGATACTGAAGACTtaaaagaggatataaataaaacagaagacatttgtaataaaaatgaagTTGATGCTGATACAGAGGAACAATCAATGGATATTGAACCTGTTGCACCCTCCACTATTAGTCATGAtgacaaatcaaataaaatggacattttacatattaaggAAGAGGTTAACACTAGTTATGAATTTAGTTGTGAAGTAGATAGATGCAATAATGATGATGCACCTTTTGATACCATACGTCCAATTAATGTAATTACATATGGGAATATTCCGGCTGACAACTTTGATGATCATTCAGACCATGAAGAACTTTTGGATTCGGAAACtacaaaaagaaataaacagtTTGTTAATATGATGAGTGAAAATTATTTTGGAGACAATATCTATGCTGACTATTTCACACCAGACCATGTAGAAGCTTTTGATGCAGACAAAGAGTCGAAAGATTCAGAAAGACCGGATGATGTATGGGGGGAGCCATCTCAGAAGCGAAATGAATTTGTATTACCAAATTTAATTGACAACAGTTATAAAATTCCGTATAGCACTAAGGTACACTATGATGGGAATGAAAGTGAAAGAAAAATTGAATGTAGGGAGGAACCAGACACCAAGGATGATATTTTGAGTGAAAGCAGAAGTGAAGGAGAGCCACCCTTGAATATATGTGCTGATGAACACATGCCACCTAGAGGAGAACTCAGTGGCCAAGAGAGTAATGGGGACATGGAATCACCATGGAGTCGGATGTATAGTGAAGTGACACCCACGGAGCCTTACGACTTGATTGCTAGAGAGAGTTGGGTGTCTGATGGTTCAGATATTGATGTAACTGAAAAGAAAGATAACTTgGATGATGATGTTCAGTACAAGTGTCGTCTTCATACGTGCACACAGTGTGGCCTCAAGTTTGCCTCGCTAAAGGAACTGCGGGCTCACAGAACGAACGAGCACGTCACGGCAACGTGCTCGGCGTACAAAACCTACAGTCGCATGATCACAGCGAGATCTATCAAGAAAGAAGAGAAGATCAATGATAATATTCTAGCAGGGAAACATCTATTTGATACGGATGTGAAGGACCCCAAGGCGGCCCTACAAGAGTATGATATTCTAAGGGATTGTAAACCGGAAATTAAGAGTTTGATCAAGCAGGAGAAGAAGAGGAAAAGAAACTTCATCTGTGAGATATGCAAGATTGACCAGGGCAACGATGTGGCATTCAATGAACATCTGAAATTGCATCCGTTGGAATGTCAGACTTGTGGGAAAAGGTTCTATAGACGGGCAAACCTTTCGCTGCATATGAAGACACATCTGGGGATAAAGAACTATAAATGTGAAGTATGCCAGAAGCGGTTCATAACCCGACAGAAGTTGAATGAGCATCGCAACATCCACACGGGCCTGGCGCCCGTTAAGTGCACCGTGTGTGACGAGACCTTTAGGAGATATTCCAATATGGTGCAGCATAGAAATCGTCACCACCTCAAGAAGAAAGCGAAGGTGAAGGACTTCGTGTGCCACGCGTGCGGCGCCGTCTTCCACTCGGCGGCCAAGCTGCTGTGGCACAAGGAGACCCATGACGAGAAGCCCAAGGCGTGCCTGTACTGCAGCGACAGGTTCGTGCACGCGGCCTCGCTCACCCGCCACGTGCGCCGCGTGCACAACGAGTTCTACCTGTCCGACAAGCTGCGGGGCAAGGTGGACAACGTGCACTGTCACGTGTGCAAACAGGTGTATCTACGCACAAATCTTCGAGCCCACCTCGAGATTCACAGCGGCAAGCGTCCCTACCTCTGCGTGGTGTGCAACAAATCGTTCACCACCAAATGGAACCTCAAGCTGCACAGGTGGACGCACATGAGCCGGTCCGCCAAGCCCTACAAGTGCACCCTTTGCAAGGGCGCCTTCGTCCGCCACTCCGAGTACATCTCGCACATGAATGCTCACAAGTCGGTGCGGCCATACACGTGCAACTACTGCGGGTGCCAGTTCATAAGGAAGTATAACTGCCAGCGCCACGTCAGGGAACACGAAATGGCGAAGAAGTTTGTGTGCAAAGTGCCTGAGTGTGGTAAGTCCTTCCATAGGGGTTACTACCTGTCCGAGCATATGAAGGTTCACAGTGGGGCACGGCCGTTCGCTTGCAATATATGCGGGAAGACTTCTAGTAACAAATCTAATCACAATAAACACGTTAAGATACATCAATTGAGAGAGACTGTCGCGACTGAAGCGTAA
- Protein Sequence
- MDQRVQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCSLSAKKSNDSTVTLTPSSSEGSYRSRTPLTDDSVRWSTSRRSTDSGYWPRTPSRNKSASSNVSSNCNPELQSGASHFENNLINNSAEFSDCEVKSVKSSNAFTPNVHLTTDYNQQYPFYSENPDESEVKYSRSTDYNVTDNGNQIFTYNVPIVGNMKLPPRIVPANATRGNNNFIKFIPKSNNMMVKNIGGVRYMAPSVKPYSMMFSGNSMGSDILSPKNLSQPIDGQFNQMAHEGIAPNATSVTQNSQIIYREMVHSVDGKPYISNVPQMLNGNDNAAQNSSMYQNMMVIDQFGNTSCMYNTPPSNSMTKAEPVSNESNKTLIIEVSPMSATDEKYIKPEILNNPTTTVSDKLHTSLPSSCKGLKILSNIKVEVPVKHHKYMVNTVMDLTESDELSYVQRTPSPENSLLDLEEKKEIPKLTDDCAQPCTSSNDSLITNSLSVIKNVGKLHPEDVSIKEDKMEDEFSDSCPVPDLICNEKPSISPCSELLENSENSMDQITSTKPDPSIKIDSKDELTSSLEIKIDSKDELTSSLELLAGNNKLDHYSPDTSSDFKTKSEIYKSGLDAEDLTSGSSSRLSVSPSPDPSIPESSRQDSTLKSESPRSSINLNLQEERKVRNPPKPRNIPLSLNNIFVKKHKKILKIKNKKFASKVVQPKQEPQPSSSNTVPVEIFFDSSVVKKSEDTEDLKEDINKTEDICNKNEVDADTEEQSMDIEPVAPSTISHDDKSNKMDILHIKEEVNTSYEFSCEVDRCNNDDAPFDTIRPINVITYGNIPADNFDDHSDHEELLDSETTKRNKQFVNMMSENYFGDNIYADYFTPDHVEAFDADKESKDSERPDDVWGEPSQKRNEFVLPNLIDNSYKIPYSTKVHYDGNESERKIECREEPDTKDDILSESRSEGEPPLNICADEHMPPRGELSGQESNGDMESPWSRMYSEVTPTEPYDLIARESWVSDGSDIDVTEKKDNLDDDVQYKCRLHTCTQCGLKFASLKELRAHRTNEHVTATCSAYKTYSRMITARSIKKEEKINDNILAGKHLFDTDVKDPKAALQEYDILRDCKPEIKSLIKQEKKRKRNFICEICKIDQGNDVAFNEHLKLHPLECQTCGKRFYRRANLSLHMKTHLGIKNYKCEVCQKRFITRQKLNEHRNIHTGLAPVKCTVCDETFRRYSNMVQHRNRHHLKKKAKVKDFVCHACGAVFHSAAKLLWHKETHDEKPKACLYCSDRFVHAASLTRHVRRVHNEFYLSDKLRGKVDNVHCHVCKQVYLRTNLRAHLEIHSGKRPYLCVVCNKSFTTKWNLKLHRWTHMSRSAKPYKCTLCKGAFVRHSEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCKVPECGKSFHRGYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHQLRETVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875580;
- 90% Identity
- iTF_00875580; iTF_00876455;
- 80% Identity
- -