Ljuv012729.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000013.1:3799173-3800161[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-07 0.00032 21.6 0.0 14 39 31 56 18 62 0.79 2 2 2.7 2.4e+03 -0.4 0.1 14 23 142 150 135 152 0.76
Sequence Information
- Coding Sequence
- aTGCCGCgaaaatataaaaggaaaataGGGGCACCCGTTCGTGCTGCTTGGTCTGAAGAAGCCCTTTGCAAAGCTTTTGGGGAAATGGATAAAGGCCAAGTCGGTGTAAATGAAATATCTCGTCGTTATGGTATTCCATCTCGAACTTTGAGGAGGCGATATGCTAAAAAAAACTGTGAAAAACTTACTTTGGGAAAACATCCCACACTGGACTTTGACAACGAGAAACGTCTCGTAGCGCACATACAAAAATTAGAAAAGGCAGGATTTCCCACAACACGACAGGATGTAAGAAGACTCGCTTTTGAATTTGCCGAGAGACTGGGTTtggaaaattcttttaacaaaGAGACACGTATGGCTGTTCAGCACTGGCTCAAATCATTTCTTGAACGACACCCAGAACTCAGTATTCACCAGGCAGAAGGTTTGTCTATTGCAAGGGCTCAAGGATTAAATCGAGATGAAGTaaacaaaatgtttgaattGTTGCTAAAAGTACTAACTGAAAATGATTTGATCGATAAACCTGAtcgaatttataatattgacgaAACTGGGGTTCAAATGAACAATAATCCTGGTAAAGTTATTGCTACTAAAGGTGCCAAAGTAGTAAATTCCATCACTTCTAGCGAAAAAGGTGAGACAATGTCAATTATAGCTTGCTGTAACGCTGTTGGCAACTATGTTCTTCCAGTGGTCATTATCAAGGGGGTCAATAAAAGACCAGAGTTATTAGAGGGTCTTCCGCCCGGAGCCAAAGTGTACATGAACAAAAAATCTGCCTACGTCAACTCAGAACTCTTTCAAAAGTGTCTGAAAGAACAGTTCGTGCCAATAAAACTACAGGGTTAG
- Protein Sequence
- MPRKYKRKIGAPVRAAWSEEALCKAFGEMDKGQVGVNEISRRYGIPSRTLRRRYAKKNCEKLTLGKHPTLDFDNEKRLVAHIQKLEKAGFPTTRQDVRRLAFEFAERLGLENSFNKETRMAVQHWLKSFLERHPELSIHQAEGLSIARAQGLNRDEVNKMFELLLKVLTENDLIDKPDRIYNIDETGVQMNNNPGKVIATKGAKVVNSITSSEKGETMSIIACCNAVGNYVLPVVIIKGVNKRPELLEGLPPGAKVYMNKKSAYVNSELFQKCLKEQFVPIKLQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212401; iTF_01091834;
- 90% Identity
- iTF_01091834;
- 80% Identity
- -