Lven016146.1
Basic Information
- Insect
- Lepidotrigona ventralis
- Gene Symbol
- -
- Assembly
- GCA_002806875.1
- Location
- NIPQ01090030.1:25587-30614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 17 6.6 2.3 1 23 207 229 207 229 0.94 2 18 0.00031 0.042 14.9 1.4 2 23 266 287 265 287 0.98 3 18 3.9e-05 0.0051 17.7 1.6 1 23 432 454 432 454 0.94 4 18 0.15 20 6.4 0.3 2 23 458 479 457 479 0.95 5 18 0.16 22 6.3 2.1 3 23 562 583 560 583 0.92 6 18 0.00032 0.042 14.9 0.6 1 21 589 609 589 613 0.92 7 18 0.00094 0.12 13.4 3.2 2 23 696 717 695 717 0.95 8 18 0.00019 0.025 15.6 4.2 1 23 781 803 781 803 0.96 9 18 0.00023 0.031 15.3 0.7 1 20 808 827 808 829 0.94 10 18 0.04 5.3 8.2 0.6 2 23 840 861 840 861 0.97 11 18 2.4e-05 0.0032 18.4 0.6 2 23 900 921 899 921 0.97 12 18 2.2e-05 0.0029 18.5 1.6 1 23 926 948 926 948 0.95 13 18 0.00012 0.016 16.2 2.9 1 23 954 976 954 976 0.98 14 18 3.8e-06 0.00051 20.9 0.4 1 23 992 1014 992 1014 0.95 15 18 3.1e-07 4.1e-05 24.3 0.6 1 23 1020 1042 1020 1042 0.99 16 18 3.4e-05 0.0045 17.9 0.2 1 23 1048 1070 1048 1070 0.97 17 18 0.00013 0.017 16.1 4.1 1 23 1076 1098 1076 1098 0.96 18 18 0.0082 1.1 10.4 0.3 1 20 1104 1123 1104 1125 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATTGCTACAGAGCAAACATCGGCAGATTGCCTGAGtcatgaagaagaagaagacattAAAGTTATCATACCCATTAACGAAGGAATGTTGAAACACGAAAACCAGGATAACGAGTgtctcgaaaatatttcaacggtGGAGCACGATTATATATTACAGCAGGAATGTGTACTATCTAATGCAAATGAACAGGAACAGGAACAGGAACAACAAGaccaccatcatcatcattatcaacATCAACATCAACATCAACATCAACATCAACATCAACATCAGCTTACCTCCGGAGAATCGTTTCAACGCGAAGATTACACAGAGTATGTAGATCTGTTGGTAAAAGCAGCGGATGCAACGATAAAGCAGGACGAAGcgaaagatgaagaagaaaaattggatATTACGAACAGGGATTCCATTCAGCCAGAAGAAGCAGATTCtcagtatcaaaatgaaacgagaagaagCAAACGTAAGTTGGCCCGACGAAACTGCGAGACGAAACGGGATTCTGACGaagagaattattttgaaaatttgaacctAAGCTCAAGATTGAAGAAAGACCAATCTTCCGATCAGTcggagaaaatttttctatgttATCTGTGCGACAAGGAGTTCTTGTCGAAGAACGTTTTGAAGGAGCACATGCATTCGCACGAAGAAGTGCGAAAGGTACTCTCTCTGAAGAGAACGCCGGAGAACGCGTTAGAAAAAGACAGTTACAATGTTGCGAAATCACCACCTCCGTCGGGCAAGAGATCGAACAAATGCCCGTACTGTGGtaaacagtatatatatataacctcGTTTAGTAAACATTTGAAGaaacacgagagagagaaagaggaggggAAAGAAGAATCGATGCCCCTggaaatatcattccacgaGGACGAACACAGTTTAGATCTTGACGATTACAAGGATGCACGTCGAAATTTGAATACCGAGTATCGGAAGAAGGTCAAGCAAAAAGAGGAGACGGGTCAGGGAGAGGACCACGGAGATGAAGAACAAGAGAACAAGAGGGTGAAAGGTTGTGGCGATGGCGATGGCGATGGCGATGGCGATGACGGAGGCGGAGATAGTGGAGGAAGGGAAggaaacaacaacaacaacaacaacaacaataataatgataatgatgacaccgacggcgacgacggcgacgacggcGAGTACGACGACTATGAGAACGGCAAACGACTGGGTAATTTGAACAGCAAGGAGCAACAGAAAAGTCGCACTGTTCGTGCAGAAACGTTCGCGTGCGACAAGTGcgcaaagaaattttctacgaaacgTAACTTGCGAAAGCACGCCGTTTCGCATGCTGTTCTCAATTGTAGCGTATGCGAAGACGAGTTCGATTCGCTGGAGAAATTGAGGAATCATCGTGCGAAACATGTGGTGGAAGGTGTGTTGACCGAGCAAGAACTCGAGATGGATAAAGAGTATATAGCGATCAAGAAGGAAGGCGCTCTTGGGTATGAGACGGAGGATAAAGAAAGCGCGGGGAACGATCGTGGAACGATCGAGAAAGACGAAGTGAGATCGGTGGCAGGATTGTTGGACATGGAGAATAATTCGTCAAGGAAAAACGATAGAAATAGCGAGATTGATCGTCGTCGGTCGGGGATCAGCCACACCATCTGTAACGTGTGTTGCCAGCAATTCGCGACGAAGGAAATGTTGCAAAAGCATACGGAACAACAACACGAACGTGTGAAAACGTACAAGTGTACGCAATGTAACAAGACGTTCGGTAACGAACTTACGTTGCGTAATCATCTTATAGCCACTGATCACAAAACTTTCCTCCACGGGCAAGAATACGATCCTAATAAACGGATTAAGAGAGTCGCCGCGAGAGCCGCGcagaaaattatcgacaagaTTAAAACGGAGGATGGTTTGGAAGAGTATGACGACGAAGATGAGACCAACGACAGAGTCGTTGTTAGTCGCGTTAATTGTACGGATGGTAGTTACACTCGGAACAAGCGAGAGACTACCTCGCAGAAAAGGCATTCTAATTATAACAGGAAGGAATTGGAATGCGCGAGTTGCAATAAAAGATGCAGTTCGAAGCAGTCGTTGACGAAACATATGGAACAGCATGTAAAGGAGAGCGAGCAACAACGAGCGATCAAGTCGGAGAAACagaagcagcagcagcagcaatcGGCCGAGAGGAaggaaaaatggcaaaaggaCTGTAACAGAGGAGAGAAGATCTGCCAGAAGGATAATAGGGATGACGATTACGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGCAAGAAACGATACAGCACGAAGAAGTCGTTGTTGCGTCATCAATTGTTGCACGAAGAGCCAAATTTCGAGTGTGATATTTGCAACGTCAAGTTCTACCGCAAGGACAAGTTGAAGGCACATTACGACAAGTGTTCGGAGAAGAATCCCGATCAAGTGAGAAAGTGCAACATCTGCGGAGATACGTTCGAGAACAACGAGATTCTGCGAGAGCACAGATCGAAACACGTTACCGAGGGTATCCTTACGGAGGAAGACTTGAGAGATATCGAACCGCGGCCCGAGGAGAAGAAGCCGGGCGAGAAAATTGGTAGAAAGAGAAGGACCGACATCGTGGGCTTGGAGTGTACGGAATGCAACAAGCAGTACACGTCGAGGAAAGGGCTTTTACGGCACATTCAAGTCCACGAAGGGAAGAAATACCTGTGCGACATATGcccaaagaaattttatagaaggGAACATTTGAAGATACACGTGGCCAAACATAATATGATCAAACCGTACAAGTGTACGCGATGCACGAAGCGTTTCATCAAAGAGGAACAGCTAACGAATCATTTGTCGAAACATGATCGAACTTTCAAGAAAAACAAGGAAACGGACAGCTCGAAAAGATTTCTTTGCGAAATCTGTTCGAAGAGTTTCACGCAATCGACCACTCTGATCGCACATCTCAGAGCGCATAATGGCATTAAACCATACGTCTGCGAGGTTTGCTCGCGGCCGTTCACGACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAGGAACGGCCGTACATTTGTCAATATTGTTCACGAGCGTTTGCCAGAGCTGACACGCTCGCCAATCATTTGACTTCGCACACAGGCGAGGCCAAGTATCATTGCAAGTACTGTCCAAAGAATTTCCGTCGTCTGAAATCGCTGAAGGAGCACGTTTTCATTCACACGGGCCAAAGACCTTATGCCTGTCCAACCTGCGATCGACGCTTCAACAACAATGGAAGTCGATACGCCCATAGTAAAAGGTGTAAACAAACTTTTGTGCAAAATCAGAATCGTGCTCAAGCATTGTCGGCGCAAGTACAAACTCAACAAACCCCTCAGACTCAAGTGCAGGCAAGAGTGCTGCAACAAACCACTCTCGAACAGGGGCAAATAGTAAAACCGcagaatattaaaactattacCATCACTAAACAACCTGAATCGGTCACCACTCAACAAACGGTTATGCAGCTGCAGGAAATATTGATGCCTTTGATCCTTCCTCTCACGGTCACTCTTACCGACGTTGGTGAAGAAGTAATATTACCAGAGGGAACCAAGATATTTACTACGTCGTAA
- Protein Sequence
- MEEVIDQTIATEQTSADCLSHEEEEDIKVIIPINEGMLKHENQDNECLENISTVEHDYILQQECVLSNANEQEQEQEQQDHHHHHYQHQHQHQHQHQHQHQLTSGESFQREDYTEYVDLLVKAADATIKQDEAKDEEEKLDITNRDSIQPEEADSQYQNETRRSKRKLARRNCETKRDSDEENYFENLNLSSRLKKDQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKRTPENALEKDSYNVAKSPPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEESMPLEISFHEDEHSLDLDDYKDARRNLNTEYRKKVKQKEETGQGEDHGDEEQENKRVKGCGDGDGDGDGDDGGGDSGGREGNNNNNNNNNNNDNDDTDGDDGDDGEYDDYENGKRLGNLNSKEQQKSRTVRAETFACDKCAKKFSTKRNLRKHAVSHAVLNCSVCEDEFDSLEKLRNHRAKHVVEGVLTEQELEMDKEYIAIKKEGALGYETEDKESAGNDRGTIEKDEVRSVAGLLDMENNSSRKNDRNSEIDRRRSGISHTICNVCCQQFATKEMLQKHTEQQHERVKTYKCTQCNKTFGNELTLRNHLIATDHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEEYDDEDETNDRVVVSRVNCTDGSYTRNKRETTSQKRHSNYNRKELECASCNKRCSSKQSLTKHMEQHVKESEQQRAIKSEKQKQQQQQSAERKEKWQKDCNRGEKICQKDNRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQVQTQQTPQTQVQARVLQQTTLEQGQIVKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- -
- 80% Identity
- -