Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: -
Assembly: GCA_002806875.1
Location: NIPQ01091460.1:64530-72354[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.4e-05 0.0045 17.9 1.4 1 23 236 258 236 258 0.96

2 18 0.002 0.27 12.3 1.6 1 20 264 283 264 286 0.94

3 18 8.5e-06 0.0011 19.8 1.4 1 23 292 314 292 314 0.98

4 18 4.9e-05 0.0065 17.4 4.4 1 21 320 340 320 342 0.95

5 18 6.7e-06 0.00088 20.1 5.6 1 23 348 370 348 370 0.99

6 18 1.5e-05 0.002 19.0 5.3 1 23 376 398 376 398 0.97

7 18 5.8e-05 0.0076 17.2 6.9 1 23 404 426 404 426 0.96

8 18 5.7e-08 7.5e-06 26.6 2.7 1 23 432 454 432 454 0.98

9 18 4.2e-05 0.0055 17.6 6.7 1 23 460 482 460 482 0.97

10 18 1.3e-05 0.0017 19.2 5.8 1 23 488 510 488 510 0.98

11 18 3.4e-07 4.6e-05 24.2 2.9 1 23 516 538 516 538 0.98

12 18 5.1e-06 0.00068 20.5 7.8 1 23 544 566 544 566 0.98

13 18 1.6e-05 0.0021 18.9 9.1 1 23 572 594 572 594 0.98

14 18 2.1e-05 0.0028 18.6 7.5 1 23 600 622 600 622 0.98

15 18 0.001 0.13 13.3 8.8 1 21 628 648 628 650 0.94

16 18 7.8e-06 0.001 19.9 0.4 1 23 656 678 656 678 0.98

17 18 0.019 2.4 9.3 4.5 1 23 688 710 688 710 0.98

18 18 3e-07 4e-05 24.4 1.3 1 23 716 738 716 738 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.4e-05	0.0045	17.9	1.4	1	23	236	258	236	258	0.96
2	18	0.002	0.27	12.3	1.6	1	20	264	283	264	286	0.94
3	18	8.5e-06	0.0011	19.8	1.4	1	23	292	314	292	314	0.98
4	18	4.9e-05	0.0065	17.4	4.4	1	21	320	340	320	342	0.95
5	18	6.7e-06	0.00088	20.1	5.6	1	23	348	370	348	370	0.99
6	18	1.5e-05	0.002	19.0	5.3	1	23	376	398	376	398	0.97
7	18	5.8e-05	0.0076	17.2	6.9	1	23	404	426	404	426	0.96
8	18	5.7e-08	7.5e-06	26.6	2.7	1	23	432	454	432	454	0.98
9	18	4.2e-05	0.0055	17.6	6.7	1	23	460	482	460	482	0.97
10	18	1.3e-05	0.0017	19.2	5.8	1	23	488	510	488	510	0.98
11	18	3.4e-07	4.6e-05	24.2	2.9	1	23	516	538	516	538	0.98
12	18	5.1e-06	0.00068	20.5	7.8	1	23	544	566	544	566	0.98
13	18	1.6e-05	0.0021	18.9	9.1	1	23	572	594	572	594	0.98
14	18	2.1e-05	0.0028	18.6	7.5	1	23	600	622	600	622	0.98
15	18	0.001	0.13	13.3	8.8	1	21	628	648	628	650	0.94
16	18	7.8e-06	0.001	19.9	0.4	1	23	656	678	656	678	0.98
17	18	0.019	2.4	9.3	4.5	1	23	688	710	688	710	0.98
18	18	3e-07	4e-05	24.4	1.3	1	23	716	738	716	738	0.97

Sequence Information

Coding Sequence: ATGCAAAATCATCAAAATGCTCAGAACAGTGGACCAACTGCACACAATCAAAACGCACAGAGGGATGATAACAAAGTGAAAGATGAAGGTGGAAGTTGTACAACTGAACGTTGCAGTGAGAATCAGGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAAACATCTCAGGATTTACAACAAAGTCTTatgcaacaacaacaacagcagcaacagcaacaaatTGGTGTGAACATAAGTGGGAATTCATCGAACGAAAGTGGAAGTCAGAATAATACAGAGAAacctgaaaaagaaaaagaattgcgTCAACTAAATATGACGCAATTTCAAGTGCCAGATTTAAAACCAGGAGGTCACATGATGGATGTAAGAACAGCTGATGGTTCAGTTGTGAAAATCAGCGCTGGAAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTATAAGgTAAATGTCGAGGATATTAATCAACTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACTTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAGAATGGAACTCCAATTGTACAACaagttcaattaaataaatttgatattaaatcaAGTGATGGTGAAGCTACACCAGGCCCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGCGAaatatgtggaaaaatttttcagtttcgcTATCAGCTTATTGTTCATCGTAGATACCATACGGAAAGGAAACCTTTCACTTGTcagGTGTGTGGCAAGGCctttttaaatgcaaatgaTTTGACACGGCATGGAAAATGTCATTTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTGGAACGTCATATGAAGCGACATGCTACCGATAAACCATATAATTGTACTGTATGTGGGAAAAGTTTTGCAAGAAAAGAACATTTAGATAACCATACGCGTTGTCATACTGGAGAAACACCTTACAGgtGTCAATATTGTTCAAAGACTTTTACTAGGAAAGAACATATGGTAAATCATGTTCGTAAACATACGGGTGAAACACCTCATCGAtgtgatatttgtaaaaagagCTTTACTCGCAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGCCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTCTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCTTTTCGCTGTCAATACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGACAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGGTGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCACCGCATAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCACACCGGAGATTCGTCGCACTGTTGTAACGTGTGTTCAAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTCGTATGCACAGAATGTGGCAAAAGCTTTCCATTGAAGGGCAACCTGCTTTTCCACATGCGCTCGCACAATAAAGGCAGCAATGCCGAGAGACCGTTCCGCTGCGATCTTTGTCCAAAAGACTTCATGTGCAAAGGACACTTAGTGTCTCACAGACGATCGCATTCGGACGAGCGACCACACAGCTGTCCAGATTGTGGGAAAACATTCGTTGAGAAAGGGAATATGTTGAGACATTTGAGGAAACACGCGGCGGAAGGACCGCCGACACAAGTCAGCACGCCCTCAGCAATTCCTCAGTCGGGTGTTCTGCCGATCCCGGCGGCAGCTGTCCTGGTTGGCCATCCTTTGGCCCCCCCTGCGCCACCTGTAGTCCCACAACACACCGTTGTTGTGCCTACTCCCCCCGGTGTATTGACCTCCTACTAA
Protein Sequence: MQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSENQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQQIGVNISGNSSNESGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01090131;
90% Identity: iTF_01090131;
80% Identity: -