Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: -
Assembly: GCA_002806875.1
Location: NIPQ01090830.1:19608-23248[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.7e-13 1.7e-09 37.8 0.0 1 39 323 362 323 366 0.90

2 4 1.7e-12 5.1e-09 36.2 0.1 2 39 378 415 377 418 0.94

3 4 6.3e-19 1.9e-15 56.9 0.0 2 45 433 477 432 477 0.97

4 4 7.2e-19 2.1e-15 56.7 0.1 1 42 484 526 484 527 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.7e-13	1.7e-09	37.8	0.0	1	39	323	362	323	366	0.90
2	4	1.7e-12	5.1e-09	36.2	0.1	2	39	378	415	377	418	0.94
3	4	6.3e-19	1.9e-15	56.9	0.0	2	45	433	477	432	477	0.97
4	4	7.2e-19	2.1e-15	56.7	0.1	1	42	484	526	484	527	0.97

Sequence Information

Coding Sequence: ATGAAACTCTATCCGCTGAAACGAACCTCACTGTTGAAAACAGCCGATCAACTAAAGATCAAGGGACTTTGCGAAGTGCCTGAAAGTAGAGACGGCCCACCCTCGGTAAGCCTGAGTTCGCCACCAAGGGAGCCCGGCACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCAAAGGTACAAAAGGCCTAGAACTACGTTCGAACCTCGCGCTACAGATTCGAGGCATTACGATCGATACAAAGAAGAGgaatcgaacgaaaattacgaTTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGTACGGAGGCAACTGCGGGAGCAGTAGTGCTGGAAAATTGCCAACGCAACAGTAACAATAGTACCACTACTGGCAACACCACCACCGCCACCAccactaccaccaccaccaccaccaccaccacgaacaacaacaataataataacaacaacaacaatagtAGCAATAATAACTCCACCGGCAACGGTAACAATACGagcaacaacaataacaacggtGATATGTTTTGTCATACAGGTCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGATCTACCTCCAGAAACTCAACCTACACCGCCGAGTGCCACGTTGGTTGGCACTACGATTACGCATTTAAGGGACCCGGATCATCATTCCACAGAGATTCAAAATTGTGACAGTGTAAAGATAAAGTTCGAAACGTTGCACACGATGGATTCGTCGGACACGATTGATATCGATAGCCACATGTCAGATCGGGCGAGCGTTAGTTCAAAGAACGCAGCCGATAGCGACAACATGATGATGATCACACCGGAATTGCTTGGACTGATGCCTTCTGGAAGTTCGATACACTCGGATTCTGGTGAGAATAACTCGAGGGGCCATTCCGGGCAATCCAGCTCGCATCATCACGGTTCCAAATCGTGGACTCAAGAGGACATGGATGCTGCTTTGGAAGCCTTACGGAATCACGATATGAGCCTTACGAAAGCCTCTGCAACGTTCGGCATACCGTCGACGACTTTGTGGCAACGAGCGCATCGGTTGGGAATCGATACTCCAAAAAAAGATGGCCCTACTAAATCGTGGAGCGACGAGAGTTTAAACAACGCGCTCGAAGCACTACGGACTGGGACAATATCAGCAAACAAAGCTTCAAAAGCATTTGGAATACCGTCAAGTACGTTGTATAAAATCGCGAGAAGGGAAGGCATCAGGCTGGCTGCACCTTTCAATGCAAGTCCCACCACCTGGTCGCCTGCCGATCTCGATCGTGCCCTCGAAGCAATACGCTCCGGCCAAACGTCTGTGCAGAGGGCGTCGACAGAATTCGGTATACCAACAGGAACGTTGTACGGCCGATGCAAAAGAGAGGGCATCGAACTTAGCAGGAGTAATCCTACACCTTGGAGCGAAGATGCTATGACCGAGGCTCTCGAAGCTGTCAGATTAGGCCATATGAGCATTAATCAAGCGGCGATCCACTATAATTTACCGTACTCCTCCTTGTACGGTCGTTTCAAGAGGGGGAAATATGAAGAACCAGCGGTGGGTGAGATATCGCAAGACGGTAGTAGTCCTCATTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTATACCCGATCAAATGTCGTACCAAGGCAGCTGA
Protein Sequence: MKLYPLKRTSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHQRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLENCQRNSNNSTTTGNTTTATTTTTTTTTTTTNNNNNNNNNNNSSNNNSTGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAIPDQMSYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00230773;
80% Identity: -