Lspi000311.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000007.1:740614-742445[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.093 3.7e+02 1.7 0.0 21 44 222 245 214 248 0.86 2 7 0.0064 26 5.5 0.1 20 43 249 272 242 277 0.79 3 7 0.0068 27 5.4 0.0 21 45 278 302 274 311 0.81 4 7 0.01 40 4.8 0.1 21 45 362 386 356 395 0.84 5 7 0.044 1.8e+02 2.8 0.0 22 45 419 442 415 445 0.88 6 7 0.0069 28 5.3 0.1 21 44 474 497 466 502 0.78 7 7 0.0039 16 6.1 0.1 18 44 499 525 497 529 0.88
Sequence Information
- Coding Sequence
- ATGGAATTGAATAAATTGTGCCGAACATGTTTAACAGCAGCTGAAGATATGAATTCATTGTATGAGACTTGCGCAAATATTTGTTTTGCTGAAATTTTATCGAAATTCACACCATTAATTTGTTTTCAAAGCGACGGCCTCCCATCACAAATTTGCCGCAATTGTATTGGGGAATTAAACCGTCTTAACGCATTTCGGTTGAAATGTCTCGAATCGGATATCAGTTTGCGGAATTACTTAAGCAACGGTGTCAAAACAGAGGACACTAATACAGTTGAAGAGGTAATAGTGAAAAACGAGTTACCAAATAGTGAAATGAACAAATTCCAATTTTCTGATGTAACATTTGAAGAAATCAATGTATTGCGAAATCACTTGGACAACAAAACTGAAGATCGCATTGAAGAAGTGTTAATAAAAAGCGAGTTTCCTATACACGTAGAAGAAAATCCAGAAACAATTCAGTCGCAAAAAGACCCATTAACAGTTGCCGAAACACAAACGGACATTGCGCAAGAGTTAGACATTGTAAAgcacgaagccgtaaagtttgaagaagaagaggaggacgcagtaaataaaccgatgcaatattcgtgtatcgtttgtaacaagtcatatggacaaaagaattatttaaaagttcacatgcgtacgcacaccggagagaagccatttccatgtacagtctgcgacaatgcgttcagaacaaaggaacatttaaaaatacatatgcgttcgcacactggagagaaaccatatacgtgtactgtatgccatatgtcatttgcgcataaacaaaactttaaattgcatacgttaatacacacgggagagaaaccatatacgtgtacagtgtgcaatctttcatttgcccaaccgaaaggtttatcaatgcatatgcgaagacacaccggagaaaagccgtatgcatgtacagagtgtgacaaaacgttctatacaaagcaacatttaacataccacatggctaagcataccggagaaaagccttatccgtgtaatttctgtgatagttcattcaacgtgaaacaacaattaacgtgccatattcgcacgcacactggggaaaaaccacatacttgttcattttgtaacatttcgttcagtcaaccacaaacgttaaagattcatgtacggaaacacaccggagagaaaccttatttgtgtaatgagtgcaacaagtcgttttatacaaagcaacacttaaactatcatatgggaacacatgccagagagaaatcattttcgtgcacaatttgtagtgttacatttgatgaagtggaaaatttaaagttgcatatggaaacgcatcctgaaagcgctttgtacccgtgtacatattgcgggaaaccatgcaatacgaatcagaatttaacggatcatatgagaacgcatacgggagagaagccatatacgtgtacggtgtgcaatatggcgtttagtcgaacgcaaagcttaaagatacacatgcgtaggcatacggatgagaagccgttttcgtgtacaatttgcaataaatcgtttatacagaaacaaagcttgaagaatcatatgcgaacgcacgccgactaa
- Protein Sequence
- MELNKLCRTCLTAAEDMNSLYETCANICFAEILSKFTPLICFQSDGLPSQICRNCIGELNRLNAFRLKCLESDISLRNYLSNGVKTEDTNTVEEVIVKNELPNSEMNKFQFSDVTFEEINVLRNHLDNKTEDRIEEVLIKSEFPIHVEENPETIQSQKDPLTVAETQTDIAQELDIVKHEAVKFEEEEEDAVNKPMQYSCIVCNKSYGQKNYLKVHMRTHTGEKPFPCTVCDNAFRTKEHLKIHMRSHTGEKPYTCTVCHMSFAHKQNFKLHTLIHTGEKPYTCTVCNLSFAQPKGLSMHMRRHTGEKPYACTECDKTFYTKQHLTYHMAKHTGEKPYPCNFCDSSFNVKQQLTCHIRTHTGEKPHTCSFCNISFSQPQTLKIHVRKHTGEKPYLCNECNKSFYTKQHLNYHMGTHAREKSFSCTICSVTFDEVENLKLHMETHPESALYPCTYCGKPCNTNQNLTDHMRTHTGEKPYTCTVCNMAFSRTQSLKIHMRRHTDEKPFSCTICNKSFIQKQSLKNHMRTHAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873235;
- 90% Identity
- iTF_00873235;
- 80% Identity
- iTF_00873235;