Basic Information

Insect: Leistus spinibarbis
Gene Symbol: -
Assembly: GCA_933228875.1
Location: CAKOGB010000007.1:654735-657804[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.1 4.1e+02 1.6 0.2 22 45 169 192 161 200 0.83

2 11 1.9 7.7e+03 -2.5 0.1 26 45 201 220 192 225 0.77

3 11 0.22 8.9e+02 0.5 0.1 21 44 251 274 244 278 0.83

4 11 0.038 1.5e+02 3.0 0.2 21 46 279 304 275 310 0.75

5 11 0.0075 30 5.3 0.1 21 45 307 331 300 340 0.86

6 11 0.18 7.3e+02 0.8 0.1 18 45 499 526 496 533 0.81

7 11 0.025 1e+02 3.5 0.1 21 43 530 552 522 558 0.74

8 11 0.023 90 3.7 0.0 21 45 558 582 555 587 0.87

9 11 1.2e-05 0.049 14.2 0.2 21 52 586 617 582 617 0.90

10 11 0.007 28 5.3 0.0 21 49 614 641 612 646 0.88

11 11 0.0016 6.4 7.4 0.0 25 45 646 666 642 669 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.1	4.1e+02	1.6	0.2	22	45	169	192	161	200	0.83
2	11	1.9	7.7e+03	-2.5	0.1	26	45	201	220	192	225	0.77
3	11	0.22	8.9e+02	0.5	0.1	21	44	251	274	244	278	0.83
4	11	0.038	1.5e+02	3.0	0.2	21	46	279	304	275	310	0.75
5	11	0.0075	30	5.3	0.1	21	45	307	331	300	340	0.86
6	11	0.18	7.3e+02	0.8	0.1	18	45	499	526	496	533	0.81
7	11	0.025	1e+02	3.5	0.1	21	43	530	552	522	558	0.74
8	11	0.023	90	3.7	0.0	21	45	558	582	555	587	0.87
9	11	1.2e-05	0.049	14.2	0.2	21	52	586	617	582	617	0.90
10	11	0.007	28	5.3	0.0	21	49	614	641	612	646	0.88
11	11	0.0016	6.4	7.4	0.0	25	45	646	666	642	669	0.91

Sequence Information

Coding Sequence: ATGTCGAATGTAAATGAAATCGAATTTAATAAAGTTTGTCGAACGTGTTTAACACGTTCTGAAGATATGAAATCATTATTCGAACCCTGCTCCACCGCAACGCGAATATGTTTTGCCCAAATGCTAATGTCTTTCACACCACTAAAGTGTAATGCAAGCGATGGTCTTCCAGCTCAAATTTGCCATAAGTGCTCAGACGCTCTAAACTTAATACAAAACTTTAAATTAAAATGTCTAGAATCAAATAGTATATTGCAAAACTATATAAAACCAATGACCAAAACTGAGGAATCTCACATATTAAAAGACTTATTGATCCAAACTGATTCACCAGTGTACCAAGAAATTTTTATAAAAGTCGAAGACACTATAAACGAAATCCCTGCATTACCTTGTTTAAAAATTAGTGATAAAAGTGACATGAAAGATCCCCTAACACTTAACGACACGCCAAATGAGCATGAAATTCATTATGATACCAAAATAAAAATCGAACCGGAAGCACAAGAACCATATATATGCGCCATTTGTGACGCCTCTTACAATAAAAAGGCTAGTTTGACCCAACACATGCGTACGCATAGAAAATCGAAGGAATATTCCTGCACAATATGCGGTAATACGTACGTTCAAAAGCAAAGATTCACAACGCATCTCCAAACGCACgacaaaccgttaagaacctgccatttttgcggcaaacaattttttaatacctctaattacgctaaacatttacgggtacacagtggagagaagccacatgcgtgtacgctgtgtgaccgttcgtttacatctaaatcgaatttaaacgatcatatacggacgcatactggtgaaaagccatatacgtgtaccgtgtgcaaatcgtcgtttagtcgccagcatattttaaatgtgcatatgaggatgcattcgggagagaagccgttttcgtgtaccgtttgtgagcggacgtttcgagtgaatcatagtttgcagaaacatttgtatacgcatggcggagagaaaccgttttcctgtacaTTCAATGACACCGATGGTCTTCCAGCTCAAATTTGCACCAGTTGCATTTCCGAAATAAACAAATTTGAAAGATTTCAACAAAAATGTCTTGAATCCAACAACATATTACAAGATTACATAAAAAACGATATTAACAATATTGAAGAAATATTAGTTAAATGTGAATATTCCACTATTCCTGATAAAGTCGACCCAGAGTTTGGCACCCAAGAAGATCTAACGAAATCAACAAATGCCCAAAATCCAACGAATATATTAGAAACGTTATTAAAGAAAACCAAGAAATCGCTTCCCGAAATGTCGAAAGACGTTGTAAAACAAGAATTAAATGTTACAATTACGATTGATAATGAAAATAATTTACAAAAATTAATAGAAATCGGAAACAAAGAGAAACCggaaccttatccatgtaaagtgtgtaaaaaaccgtttaaaatacgatcaaaactactagtgcacctgcgtagacacaatggagagaaaccatatccgtgtacagtctgtaaacggtcatacgtccaaaaatctgatttaaccgtacacatgcgtacacattctggagaaaaaccgtacgcttgtacaatctgcaacgcatcttttaatttgaaaccgagtttgaagtatcatatgctagcgcattcgggagagaaaccatatgcgtgtacagtgtgtgatagtacgtttacacagaagcaaagtttagatggtcatttgcgtgcgcatcttggagagaagccgtacacgtgtacagtgtgtgatagtgcgtttaatcaacggcaaagtttaacacggcatttgcagctgcattcgggagagaaaccattttcgtgcttgttttgtgatgagacatttagccaaaagcaagctttaaaaaggcatattcggaaacatttcggggggaaatcatttacatgtacagtttgcaaaacggcgtttcaaaatatgtcaaatttaaggaaacatttacagaCACATAATCTATAA
Protein Sequence: MSNVNEIEFNKVCRTCLTRSEDMKSLFEPCSTATRICFAQMLMSFTPLKCNASDGLPAQICHKCSDALNLIQNFKLKCLESNSILQNYIKPMTKTEESHILKDLLIQTDSPVYQEIFIKVEDTINEIPALPCLKISDKSDMKDPLTLNDTPNEHEIHYDTKIKIEPEAQEPYICAICDASYNKKASLTQHMRTHRKSKEYSCTICGNTYVQKQRFTTHLQTHDKPLRTCHFCGKQFFNTSNYAKHLRVHSGEKPHACTLCDRSFTSKSNLNDHIRTHTGEKPYTCTVCKSSFSRQHILNVHMRMHSGEKPFSCTVCERTFRVNHSLQKHLYTHGGEKPFSCTFNDTDGLPAQICTSCISEINKFERFQQKCLESNNILQDYIKNDINNIEEILVKCEYSTIPDKVDPEFGTQEDLTKSTNAQNPTNILETLLKKTKKSLPEMSKDVVKQELNVTITIDNENNLQKLIEIGNKEKPEPYPCKVCKKPFKIRSKLLVHLRRHNGEKPYPCTVCKRSYVQKSDLTVHMRTHSGEKPYACTICNASFNLKPSLKYHMLAHSGEKPYACTVCDSTFTQKQSLDGHLRAHLGEKPYTCTVCDSAFNQRQSLTRHLQLHSGEKPFSCLFCDETFSQKQALKRHIRKHFGGKSFTCTVCKTAFQNMSNLRKHLQTHNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00873239;
90% Identity: iTF_00873239;
80% Identity: iTF_00873239;