Basic Information

Insect: Leistus spinibarbis
Gene Symbol: -
Assembly: GCA_933228875.1
Location: CAKOGB010000007.1:744469-746218[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0003 1.2 9.7 0.3 26 46 188 208 182 215 0.86

2 11 0.22 8.6e+02 0.6 0.2 21 44 211 234 207 238 0.83

3 11 0.00044 1.7 9.2 0.1 21 44 239 262 234 266 0.90

4 11 0.047 1.9e+02 2.7 0.3 21 44 295 318 289 332 0.82

5 11 0.0024 9.7 6.8 0.2 21 45 351 375 344 382 0.89

6 11 2.1 8.5e+03 -2.6 0.0 22 44 380 402 376 408 0.79

7 11 0.064 2.5e+02 2.3 0.0 26 44 410 428 401 435 0.87

8 11 0.066 2.6e+02 2.2 0.2 22 45 434 457 427 461 0.84

9 11 0.024 97 3.6 0.2 21 44 461 484 457 489 0.86

10 11 0.013 53 4.4 0.1 21 46 489 514 484 517 0.87

11 11 6.9e-05 0.28 11.8 0.2 21 46 517 542 513 547 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0003	1.2	9.7	0.3	26	46	188	208	182	215	0.86
2	11	0.22	8.6e+02	0.6	0.2	21	44	211	234	207	238	0.83
3	11	0.00044	1.7	9.2	0.1	21	44	239	262	234	266	0.90
4	11	0.047	1.9e+02	2.7	0.3	21	44	295	318	289	332	0.82
5	11	0.0024	9.7	6.8	0.2	21	45	351	375	344	382	0.89
6	11	2.1	8.5e+03	-2.6	0.0	22	44	380	402	376	408	0.79
7	11	0.064	2.5e+02	2.3	0.0	26	44	410	428	401	435	0.87
8	11	0.066	2.6e+02	2.2	0.2	22	45	434	457	427	461	0.84
9	11	0.024	97	3.6	0.2	21	44	461	484	457	489	0.86
10	11	0.013	53	4.4	0.1	21	46	489	514	484	517	0.87
11	11	6.9e-05	0.28	11.8	0.2	21	46	517	542	513	547	0.90

Sequence Information

Coding Sequence: ATGGAAATAAATAAATTATGCCGCACTTGTTTATTAACGAGTGAAAATATGAGCTCATTATATGAGACGTGTGTAACTTCATCGCAAATTTGTTGGGCCGAAATCCTATCGACGTTCACACCATTGATTTGTTTACAAACCGATGGTCTCCCAAAACAAATTTGTGGCAATTGTATTAAGGAATTAAATCGTCTTAATGCATTCCGATTGAAATGTTTAGAATCGAATGCCACATTGCGTAGTCACTTAGGCAAAGATGCAAAAACAGACGATGATGAAGCATTAGAAAACGCAAATAAATCATATATGTCTGTATTACAAAATCGCTTAGAAAACAAATTTAAAGATTCCATAGAAAAGGTGTTCATAAAATGCGAATATCCTGTAAATGAAGCAAACAGTACCAGTACAACATTTGAAGAAAAGCCGAACTTAAACGTTATTCAAGAAAGTAGTACAACAAAAGACCCATTACAAATTGCCGAAAAAGAAAAGGACCTAGATCAAGAATTAGATATAGTAAAGCATGAAAGAAATGATGGTattgaaaaggaactatattcgtgtacagtgtgcaataaatcgtatagacaaaaacagaatttaaggaagcacatgaggacgcatacaggagagaagccttatccatgtacagtatgtgataactcatttagaaccaggcaacatttaacgtatcatatacgaacgcataccggagaaaaaccatatacgtgtacagtatgtaatatatcatttcgcttaaatcaaaacttaaagatacatatgcgtacgcacactggagaaacaccgtacccatgtacacattgcgacaaatcgtttacgacaaatcagcaattaatattacatatacgatcgcataccggagagaaaccatatacgtgtacagaatgtaacgcatcatttagtcaaccgttaagtttcaagtttcacatgcgtacgcacactggagaaacaccttacccatgtacatgttgcagcaaatcgtttaatactaagcaacgtttaacatttcacatgcgtacgcacaccggtgaaaaaccatatacctgtacagtgtgtacaagagcatttagtcaaccgcaaagtttaaagtctcatatgcaaaagcatacaaatgagaaatgttacccatgcacatcttgcgccaatacatttaaacaaaaacaacaattaatggaccatatgcgtacgcatccaatacagcatgcatgtacaatttgcggcatttcgttcaaaacgaagcggaatttaagtggacatatgcgagcacacagcggagagaaatcatattcgtgtacagtgtgtaatgtttcgttcagggaaaagcatcatttaaaagttcatttgcggaaacatacggatgaaaagccgtacttgtgcgctgtttgtaactattcgtttcggcaaaaacagcatttaattgtgcatatgcgaaatcacaccgaagagaagccatattcgtgtacggtttgtgatagttcgtttaaacaaaagcaacatttaactattcatatgcgaatgcataccggagaaaaaccatatacgtgcaccatttgtaacacgtcgtttaaacaaacgcatcatttacaaaatcatatgcagatgcatgcATTACAGAATATATGTCCATCCAAGTACGATTAG
Protein Sequence: MEINKLCRTCLLTSENMSSLYETCVTSSQICWAEILSTFTPLICLQTDGLPKQICGNCIKELNRLNAFRLKCLESNATLRSHLGKDAKTDDDEALENANKSYMSVLQNRLENKFKDSIEKVFIKCEYPVNEANSTSTTFEEKPNLNVIQESSTTKDPLQIAEKEKDLDQELDIVKHERNDGIEKELYSCTVCNKSYRQKQNLRKHMRTHTGEKPYPCTVCDNSFRTRQHLTYHIRTHTGEKPYTCTVCNISFRLNQNLKIHMRTHTGETPYPCTHCDKSFTTNQQLILHIRSHTGEKPYTCTECNASFSQPLSFKFHMRTHTGETPYPCTCCSKSFNTKQRLTFHMRTHTGEKPYTCTVCTRAFSQPQSLKSHMQKHTNEKCYPCTSCANTFKQKQQLMDHMRTHPIQHACTICGISFKTKRNLSGHMRAHSGEKSYSCTVCNVSFREKHHLKVHLRKHTDEKPYLCAVCNYSFRQKQHLIVHMRNHTEEKPYSCTVCDSSFKQKQHLTIHMRMHTGEKPYTCTICNTSFKQTHHLQNHMQMHALQNICPSKYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00873225;
90% Identity: iTF_00873225;
80% Identity: iTF_00873225;