Lspi000100.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- RpS23
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000004.1:261361-266118[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.7 6.7e+03 -2.3 0.0 26 43 94 112 85 117 0.64 2 5 0.062 2.5e+02 2.3 0.0 22 45 120 143 115 150 0.85 3 5 0.0011 4.5 7.9 0.0 23 52 149 178 141 179 0.86 4 5 0.00014 0.56 10.8 0.0 23 52 177 206 173 206 0.90 5 5 5.2e-05 0.21 12.2 0.2 21 48 203 230 201 232 0.91
Sequence Information
- Coding Sequence
- ATGGATATCAAAGAGGAGACATCAGAAAGCACTTATGACTCGAGACTCGAGCCCGATGTTATACTGGAGGATTCAGATTCAAATGACTCCAGTTTATCTTTATCAACATCTACTAATCCTTCACCGAAAAATTACATGTTCAAAGATTTAGAGATGCAGCTAGAGAAAAGTGCGTTTCATAAAATCCGGGCCACTTTCGGTGCCCCATTCACCGGCGCTCCCTTCAATGAAACCTCGCTGAGTGTAGCTGCAAGTAGCCGGGATTCGGGGCCCTTGCAACAATGTCCCACTTGTAAAAAGTATTTCAAACGCCTCAGTGCGCATTTGTTGAAACATCAAGATATCAAAATCGATCCGGATCGCCCATTTACTTGCGATTATTGTCAGAAGTTATTTAAAAATTTAAGTAATCTAAACGTACATATGCGTTCTCACACTGGCATCAAGCCGTACATTTGCGAAGTGTGCAAAAAGGGCTTTACCCAGTCTGGTAACCTTGTGCACCATTTGCGGATTCATACCGGTTCGAAGCCGTTCAAATGTCCGGTTTGCGACCGCGGATTTAGCCAATCGGGAAATCTGGGCAACCACATTCGTTTACATAATCAAGAGAAGCCGTTCCAGTGTCATATTTGTAATAGAGCATTTACTCAGTCATCGAATTTAAATTCTCATCTTAAGAATAATCATAAAGAAATTCAACAAATTGAGACTTATCTCAAAAATAAACAAGAGGAAATTACCCAACAAAGTGACATTCATTTTAAAGGGGATATAAACCAAATGCGCACATTTATAAATGAGTGCCGCCTGCCGGACGGCTTGGGCAAAGAGCAACGATCTCTTCCGGTTTTACATCTTCTACAAGCAAGATGGTTTTTGTTGGGTGTAGGTAAACCCCGTGGTCTACGTACTGCAAGAAAACATGTGAACCATCGCCGCGAACAGCGATGGGCGGATAAGGACTACAAAAAGGCCCATTTGGGCACTCGCTGGAAGGCCAATCCCTTCGGCGGCGCTTCCCACGCCAAGGGCATCGTCCTCGAAAAAGTTGGCGTTGAGGCGAAACAGCCTAACTCTGCTATCCGGAAGTGCGTCAGGGTGCAGCTGATCAAAAACGGCAAGAAAATCACGGCGTTCGTACCCCGGGACGGTTGTTTGAATCACATTGAAGAAAACGACGAGGTTCTGGTTGCCGGATTCGGTCGCAAGGGTCATGCTGTTGGTGATATTCCCGGAGTCAGGTTTAAGGTTGTTAAAGTGGCCAATGTTTCCCTGTTAGCGTTATACAAAGAAAAGAAAGAACGACCAAGATCGTAA
- Protein Sequence
- MDIKEETSESTYDSRLEPDVILEDSDSNDSSLSLSTSTNPSPKNYMFKDLEMQLEKSAFHKIRATFGAPFTGAPFNETSLSVAASSRDSGPLQQCPTCKKYFKRLSAHLLKHQDIKIDPDRPFTCDYCQKLFKNLSNLNVHMRSHTGIKPYICEVCKKGFTQSGNLVHHLRIHTGSKPFKCPVCDRGFSQSGNLGNHIRLHNQEKPFQCHICNRAFTQSSNLNSHLKNNHKEIQQIETYLKNKQEEITQQSDIHFKGDINQMRTFINECRLPDGLGKEQRSLPVLHLLQARWFLLGVGKPRGLRTARKHVNHRREQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873352;
- 90% Identity
- iTF_00873352;
- 80% Identity
- iTF_00873352;