Lspi014264.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000355.1:141290-142653[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.004 16 6.1 0.1 20 44 156 180 148 184 0.89 2 8 9.1e-05 0.36 11.4 0.1 21 45 185 209 180 217 0.86 3 8 0.51 2e+03 -0.6 0.0 21 43 213 235 208 240 0.68 4 8 0.00013 0.51 10.9 1.0 21 44 241 264 234 269 0.91 5 8 0.0016 6.5 7.4 0.7 21 45 269 293 265 301 0.84 6 8 0.35 1.4e+03 -0.1 0.2 21 36 297 312 293 324 0.68 7 8 0.00049 2 9.0 0.2 18 44 322 348 318 352 0.89 8 8 0.00044 1.8 9.2 0.5 21 45 353 377 348 384 0.83
Sequence Information
- Coding Sequence
- ATGGAGTTAAATAAATTGTGCCGCACATGTTTATCAGCGTCTGACGACATGAAATCATTATATGAGACGTGTGCAACTTCCATGCAAATTTGTTGTGCAGAAATGTTATCGACTTTCACACCATTAATTTGTTGTAAAGACGATGGTTTTCCCACATTGATTTGCCACAATTGTATTAGTGAAGTAAACCGGTGTTATACATTCCGATTAAAAAGTCTTGAATCTGATGGAGTAATACGGAAACATATTACTGTGCGGAATGAACTAAGAGAATCACGCAACCAAAATACGATTAAGCTTGAAGAAGATAGTCGTAATTTTGAAGAGGTGTCGATAAAAAATGAATTTCCTACTTCATCCAAGAACGAAATATCAACATCTTTAAAAGATCCATTGTCACTTACTGAAATTCCAGTAGTTATGGATCAAGTATTAGACATCGAAAAGCATGAAGTCGATGCACCAGAAAgcgaaaagccatattcgtgtacagtatgtaacaaagcatttaaacaaaagcaaccattgataaatcatatgcgaacgcatacaggagagaagccttatttatgtacaatttgtgaccgttcatttaaacaaaagaataatttaacaagacatatgcggtcgcataccggagagaaaccttatccttgtacagtatgcgacatatcattcaattcaaaacaccatttaacaaatcatatgcttacgcataccggagagaaaccatattcgtgtcccatttgcaacaaatcttgtacacaacagcataacttacagattcatatgcggacgcatacaagagagaaaccatatacgtgtaccgtatgtaatcaatcttatagacaaaagcaatatttattataccatatgcggacgcataccggggagaagccttatccatgtacaatatgtggaagtacgtttaatttaaagcaatatttaatatcgcacatgcgtcggcatacaggagagaaaccttatacgtgtacagtgtgtaatcattcatatagccaaaagcaaaatttaactattcacatgcggacgcatacgggagagacaccatatacgtgtacaatttgccataactcgtatagactaaggcgaactttaacgatgcacatgcgtacgcatccaggagagaaaccttatccatgtacaggaagtaatactacagttgaatttttaaaagaagtcacttcaaggtcatcggtatga
- Protein Sequence
- MELNKLCRTCLSASDDMKSLYETCATSMQICCAEMLSTFTPLICCKDDGFPTLICHNCISEVNRCYTFRLKSLESDGVIRKHITVRNELRESRNQNTIKLEEDSRNFEEVSIKNEFPTSSKNEISTSLKDPLSLTEIPVVMDQVLDIEKHEVDAPESEKPYSCTVCNKAFKQKQPLINHMRTHTGEKPYLCTICDRSFKQKNNLTRHMRSHTGEKPYPCTVCDISFNSKHHLTNHMLTHTGEKPYSCPICNKSCTQQHNLQIHMRTHTREKPYTCTVCNQSYRQKQYLLYHMRTHTGEKPYPCTICGSTFNLKQYLISHMRRHTGEKPYTCTVCNHSYSQKQNLTIHMRTHTGETPYTCTICHNSYRLRRTLTMHMRTHPGEKPYPCTGSNTTVEFLKEVTSRSSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873266;
- 90% Identity
- iTF_00873266;
- 80% Identity
- iTF_00873266;