Lko_32650-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01131680.1:45265-67594[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.75 6.6e+02 0.1 0.0 26 45 366 385 356 388 0.89 2 7 0.57 5e+02 0.5 0.0 17 43 386 412 381 422 0.78 3 7 0.14 1.2e+02 2.4 0.3 19 43 420 444 415 449 0.84 4 7 0.003 2.6 7.8 0.0 21 47 450 476 441 482 0.82 5 7 0.21 1.8e+02 1.9 0.1 21 45 478 502 475 510 0.85 6 7 1.1 9.4e+02 -0.4 0.1 22 45 507 530 503 538 0.74 7 7 4.1e-06 0.0036 17.0 0.0 21 48 562 588 553 598 0.81
Sequence Information
- Coding Sequence
- ATGTCAGATGTTATGCCGGACTGTTTTGCAAATGGCAGCGTCTTTGATCCTTCCTTTTCTTTACATAATGGTCCATTCCATGGAAGCATATTTCTAAATGCACCTTTCTTTGAGATGTCAAGAAGGTGCGCTACATATGGCAACGGACATATacAATCTTATAAGCTGTTTATGGATAATGTTGGGGTAAAGATAATTCCTTTCGAAGAAGTGAAATACGATGATATGAGACTCATTTTCGATTTTGTTTATTATGGAGAAGTTGATGTACCTGTATCTGATGTGGCTTCTTTGATGGACACTGCTGAGTTGTTGCAGATTTCGTCTTTAAAATGTCCTTCTCTAAACTTTTCAGATAAGTTTTCCATAAACGACACTTGTGAGGGAAGTGTGGGCAATAGCGAATTAATGTGTGATAGAAATTCGATGAAAAATGTTAATAGGGAATACTATCCTGAAAATTTACTTCAGGAAGGCAGATTGTATTGCAGTGGACGAAACCTTAATCCACAATTAGTAAATGTACCTAAAACGAAAGTACTAAATCTTTCCAAAAAGCTGCGAGAACGAGCGATGAATGATGAATCGAAGATGAGCTTAACAAATTCCAGTGTCCACCGGAGCGAAGAGTGTTCCCAGGAGGAACCAATTCCTTTTACTTTTGTTGCTGTAAAAAGTGAGGGGCTTGATAATCAAGGAGGAAGTGATTCCCCTGCTTCTGATTTTCTGTCGGAGAAGCCCCTGGAGGAATATCCTGATAACTGTGACGTGAATCAAGAAATGGGTGAGAAAGAGGAGAGGAATTGCAGTTCTCTATCCCAAGAGGAGATGACGACAACTGTAGAAGCTTTCAGAATTGCCCGTGAATCAACAGGGAAGTCCTCTGAACAAGAAAATGAAGTAACGAATAGTTCTCAAGATCTGAAACCTTCCAGTTCCTCACACTGCGATGCTGTGTTCAGCTCTGAAACGAAATACGATCATCTTGTTTCGAATTACAGGGATCAGTTTAGTTTATACCCGTCACACTGTATGGACGGCAATGCTTTGTCAGAGTTTGCCCCAAGCCGTGGCGCAGATGATGTAAGAAACTTTTCTTGTAACGTATGTGCAGCATCGTTTTCTCTTGCAGATACTCTAAAGAAACACATGGAAAGTCACTCAGATGAGGAGAAATCGTATGTTTGTGACGTGTGTGGAAACGTATTTGATCGAAAGCTTTTTCTCAAGGAACATAAGATGGAACATCTTTCCCACCACGCTGGTGAGAAACCTTACTCGTGTAGTGTATGCCCAGCATCGTTCAAGCGAAGGTATCACCTCAAAGAACACACGCGAACTCACACGGGCGAGAAACCCTTCTCCTGTAGCCTGTGTGAATCGTCGTTCAGTCAGAGTTATCATCTGAAGCAGCACATGCAAACGCACACGGGGGAAAAACCCTTCGCGTGCGTCACGTGTCGAGCTTCCTTCAGTAGGAAGGATCAACTCAGGTTACACGTGCAGAATCACACGGGGGACAAACCGTTTTCGTGTACCACGTGCCGGGCGTCCTTTAGTCGTAAGTACAGTCTGGAGGTTCATCTTCGAAGGCACACGGGCGAGAAACCGTTTCCCTGTGAAACCTGTGGAGTTACCTTTGGTCACAAGAACAGTCTTACCGCGCACATGCGAACTCATACTGGTGAGAAACCGTTCACGTGCGGAATATGCGAGGCATCCTTCACTCAGAGTGGGCATCTGAAGAGACACGAGCTGACACACGCTGGAGACGCACACTTTGCTAAGGGTTCACATGATTCATGCGATGGTTCGCAAAATAAACGTCGAACCATACCCCTCATTTCACTCTCACATATGACTGACAAGCGTACTTGTCcgcacatcaaaagtgatcatggcaagtcaaaacaacaagaaaataGTAATGCTGGATATCCTTGA
- Protein Sequence
- MSDVMPDCFANGSVFDPSFSLHNGPFHGSIFLNAPFFEMSRRCATYGNGHIQSYKLFMDNVGVKIIPFEEVKYDDMRLIFDFVYYGEVDVPVSDVASLMDTAELLQISSLKCPSLNFSDKFSINDTCEGSVGNSELMCDRNSMKNVNREYYPENLLQEGRLYCSGRNLNPQLVNVPKTKVLNLSKKLRERAMNDESKMSLTNSSVHRSEECSQEEPIPFTFVAVKSEGLDNQGGSDSPASDFLSEKPLEEYPDNCDVNQEMGEKEERNCSSLSQEEMTTTVEAFRIARESTGKSSEQENEVTNSSQDLKPSSSSHCDAVFSSETKYDHLVSNYRDQFSLYPSHCMDGNALSEFAPSRGADDVRNFSCNVCAASFSLADTLKKHMESHSDEEKSYVCDVCGNVFDRKLFLKEHKMEHLSHHAGEKPYSCSVCPASFKRRYHLKEHTRTHTGEKPFSCSLCESSFSQSYHLKQHMQTHTGEKPFACVTCRASFSRKDQLRLHVQNHTGDKPFSCTTCRASFSRKYSLEVHLRRHTGEKPFPCETCGVTFGHKNSLTAHMRTHTGEKPFTCGICEASFTQSGHLKRHELTHAGDAHFAKGSHDSCDGSQNKRRTIPLISLSHMTDKRTCPHIKSDHGKSKQQENSNAGYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872427; iTF_00872504;
- 90% Identity
- iTF_00872427; iTF_00872504;
- 80% Identity
- iTF_00872427; iTF_00872504;