Lko_27042-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01130777.1:261971-262552[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.004 3.5 7.4 1.0 22 43 17 38 5 43 0.85 2 5 0.0011 0.92 9.2 0.1 21 47 44 70 39 76 0.85 3 5 0.014 13 5.6 1.0 21 47 100 126 74 133 0.82 4 5 0.008 7 6.4 0.1 11 52 117 159 116 161 0.79 5 5 0.0044 3.8 7.3 0.0 21 46 156 181 152 185 0.90
Sequence Information
- Coding Sequence
- ATGTACCCACACGAGCTGCGCTCCCACTCGTGCGCCACCGACTCCGACGCCAAACCCTTCGTGTGCCAGATCTGCTCGCTCACCTTCTCGCAGAAACGCAGCCTCTGTCGCCACCAACGCACTCACACAGGGGAAAAGCCGTTCGCGTGCCAGTACTGTGGCGCCACCTTCGCCGTCAGCTCCAACTACAAGCGCCACGTGCGCTACCACACCGGGGAAAAACCGTACCGTTGCGAGCACTGCCCCGCCGCGTTCGTCGCCCGCAGTCATCTCGTGAACCACGTGCGCATCCATACGGGCGAAAAGCCCTATCGATGTGACGTGTGCCCGGCGGCCTTCTCGGAGAGAGGCACGCTCAAGAGACACGCACGCGTGCACTTGGGGCAGAAGCCGTTCGCGTGCGTCGAGTGTCCCGCCACGTTCGCGGGCAGGGCGGATCTCAAGCGGCACGTCCGTTTGCACACCGGGGAGAAACCGTTCGTGTGCGGGATGTGCCCGGCGGCGTTCTCCAGGAGCGATGGACTCAAGAAGCATGTGACCATGCATGCACTGGAGAGTGAAGCCAGTTCGGCCGTTTCGTGA
- Protein Sequence
- MYPHELRSHSCATDSDAKPFVCQICSLTFSQKRSLCRHQRTHTGEKPFACQYCGATFAVSSNYKRHVRYHTGEKPYRCEHCPAAFVARSHLVNHVRIHTGEKPYRCDVCPAAFSERGTLKRHARVHLGQKPFACVECPATFAGRADLKRHVRLHTGEKPFVCGMCPAAFSRSDGLKKHVTMHALESEASSAVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872510;
- 90% Identity
- iTF_00872510;
- 80% Identity
- iTF_00872510;