Lko_33111-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01127402.1:12433-36995[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.028 24 4.7 0.1 17 43 72 98 58 103 0.85 2 9 0.00069 0.6 9.8 0.1 21 46 132 157 128 165 0.88 3 9 0.67 5.9e+02 0.3 0.0 26 43 165 182 157 191 0.85 4 9 0.00028 0.25 11.1 0.1 21 46 216 241 209 249 0.86 5 9 2 1.8e+03 -1.3 0.0 25 43 248 266 242 271 0.79 6 9 0.074 64 3.3 0.1 14 46 265 297 261 302 0.84 7 9 0.044 38 4.1 0.4 22 46 301 325 296 333 0.83 8 9 0.2 1.7e+02 2.0 0.0 25 43 332 350 326 355 0.86 9 9 0.05 44 3.9 0.1 21 36 384 401 380 402 0.77
Sequence Information
- Coding Sequence
- atgaaagtattattaattttaaagtgcaCATACACCACAATACCATGTAGCATAACAAGAGTTAtggaattttatgtttatttaatatcgaATCCGAATTTCGTTGAAATGAATTTTAGATTGTTCTCACTTACTTCCCTCTTTTCAGCTTTCCAAGAAACACCAGAATCGTCCACAAGAAGAAAGAATTCAATTAAATACGAAAGTCAATTGACGAAGTCTTCCGgagaaaaacaatttgtttgtgaCGTCTGTCATGCATCTTTTTCCATGAAAGAGAACTTTGAGAGACACAAACGAACTCACACaggagaaaaaactttttcgtGTGATACAGTGGGAGAATCATTTACACAAAAAGAAAGTCGTCTTATGCATATGCAAGTTCATTCTGGCGAAAGACCTTATTCATGCAATATCTGTCATGCTGCGTTTAGTTATAAATCAGAGCTGAAGCGTCACATGTTTATTCACTCCAgtgtaaaacaatttgtttgtgaCGTCTGTCATGCATCTTTCTCTCTGAAAGGGAACTTTGAGAGACACAAGCGAACTCACACGGGAGAAAAATCATTTTCGTGTGATACCTGTAAAGCATTATTTACTGTAAAAGCAAGTCTTCTTACGCATATGCGAATTCATTCTGGTGAGAGACCTTTTACATGCAATATCTGTCATGCAACGTTTACTTATAAATCAGTGCTTAAGCGTCACACGCGTATTCACACCAGtggaaaacaatttgtttgtgaCGTCTGTCATGCATCTTTTTCCATGAAAGTGAACTTTGAGAAACACAAACGAACTCACACaggagaaaaaactttttcgtGTGATAGTTGTGGAGCATCATTTACTCATAAAAGAAGTCTTATAAGGCATATGCGTATTCATTCTGGTGAAAGACGTTTTTCATGCAATATCTGTCATGCTGCGTTTACTTATAAATCAGAGCTGAATCGTCACACGCGTATTCACACCAGtggaaaacaatttgtttgtgaCGTCTGTCATGCATCTTTTTCCATGAAAGGGAACTTTAAGAGACACAAACGAACTCACACaggagaaaaaactttttcgtGTGATACAGTGGGAGAATCTTTTACACAAAAAGAAAGTCGTCTTATGCATATGCAACTTCATTCTGGCGAAAGACCTTATTCATGCAATATCTGTCATGCTGCGTTTATTATAAATCAGAGCTGA
- Protein Sequence
- MKVLLILKCTYTTIPCSITRVMEFYVYLISNPNFVEMNFRLFSLTSLFSAFQETPESSTRRKNSIKYESQLTKSSGEKQFVCDVCHASFSMKENFERHKRTHTGEKTFSCDTVGESFTQKESRLMHMQVHSGERPYSCNICHAAFSYKSELKRHMFIHSSVKQFVCDVCHASFSLKGNFERHKRTHTGEKSFSCDTCKALFTVKASLLTHMRIHSGERPFTCNICHATFTYKSVLKRHTRIHTSGKQFVCDVCHASFSMKVNFEKHKRTHTGEKTFSCDSCGASFTHKRSLIRHMRIHSGERRFSCNICHAAFTYKSELNRHTRIHTSGKQFVCDVCHASFSMKGNFKRHKRTHTGEKTFSCDTVGESFTQKESRLMHMQLHSGERPYSCNICHAAFIINQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872475;
- 90% Identity
- iTF_00872475;
- 80% Identity
- iTF_00872475;