Lko_24004-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01129377.1:367019-372832[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.44 3.8e+02 0.9 0.1 25 45 175 195 168 201 0.83 2 8 0.082 71 3.2 0.0 22 47 228 253 223 258 0.83 3 8 0.00011 0.094 12.4 0.1 21 48 255 281 252 285 0.88 4 8 0.11 93 2.8 0.0 20 46 315 341 309 347 0.85 5 8 0.057 50 3.7 0.1 21 43 344 366 339 371 0.88 6 8 0.24 2.1e+02 1.7 0.0 22 43 373 394 365 401 0.80 7 8 1 8.8e+02 -0.3 0.0 22 45 401 424 395 427 0.81 8 8 0.00043 0.38 10.5 0.1 21 46 428 453 416 455 0.87
Sequence Information
- Coding Sequence
- ATGGAATGTGGAGATTTGTCACTCATTCCTgagaataaagaagaagaagagatggtcataaaagtaaataatgcGTGGTCAGAAGaAGAGAAaggaagttttgaattttattcttctgaGAGTAATGCCTTGCAGAATTCAATTTTTGAAGATCTTGAGATGAAACATTCTACAAGAAAAGATGAGGATGTTAAACTGGACTCTTGCAGTATTGTATGTAAATCAGATGATGATTCTCTAGAAGCAGGGATTGATCATTCCATTCCTGATTCCCATACACGTAATGTATCTGTGGAGTCTTGTGTACAAATCAAGTTAGATGATGAAGAAAACAACTTGACTGATTCAGACCACAACAAATATTCCTGCTCCCTGGTCAATGGAGCCatattgaaaggaaaacattttcccaaaactgtgaaatcaaacaaaaatattcatttgtgtaaattttgtggTGCAACATTTAAGTGTCTCAATCTTTTCCAAGTACACCTCCAAACTCACAATAGAGAGAAACTGTTTTCATGTCATTTGTGCAAAGCAACGTATCGAAACCAAtcctattttaaaaatcatttgcaAAAACACTCTGAGAAAAATCTATACTCATGTCATTTTTGTGAAACTACTTTCATACGGAAGGTAGATATGAGAGCACATATTGTCAAACACACCAAGGACTATCCATTTATTTGTTCAATGTGTGCTGCTGGTTTTGCATGGAAAAGTCAATTGAAGAGACACCTTTTGGTTCATTCAGAAGAGAAACCATTTTCATGTTCTTCATGTCCCAAAACTTTCAGAGATAAAAGAAATCTTGAGAGACACCTTTTGAAGCATTTGGGAAATAAAGTACCTACAAGGAACAATGTCTCTTGTGATTTGTGTGATTTTAAATGTGAATATGAAAGTGTTTTGAAGATACACCAACGAAAACACACTGGGGAGAAGCCATATTTATGTCACCTTTGTGAAGCATCTTATCCTTTCAGTGGTAGTCTGAAATATCACCTCCAATCACACACTGGGGAGAAGCCATATTCATGTGATGAATGTCAGGCAACTTTTAAGCAGAAAGCCACTCTTGCAAAACATCGTTTAATTCACACTGGAGAAAAATGGTTTGTATGTGATATATGTCAAGCATCATTTCGAGATAAAAGTGGTCTGACTACACATCATCTTTCTCATTCAGGAGAGAAGGCTTTTTCCTGTCACATATGTCAAAAAGGTTTCAAACGGAAGACAACTTTGAAAAGTCATATGCGAATCCACACAGGAGAGAGACCTTACTCATGTAATTTTTGTGGGGCAGCATTCAATCAGTCAAGCATCCTTTGGAGACACCTTCGAAtccataaataa
- Protein Sequence
- MECGDLSLIPENKEEEEMVIKVNNAWSEEEKGSFEFYSSESNALQNSIFEDLEMKHSTRKDEDVKLDSCSIVCKSDDDSLEAGIDHSIPDSHTRNVSVESCVQIKLDDEENNLTDSDHNKYSCSLVNGAILKGKHFPKTVKSNKNIHLCKFCGATFKCLNLFQVHLQTHNREKLFSCHLCKATYRNQSYFKNHLQKHSEKNLYSCHFCETTFIRKVDMRAHIVKHTKDYPFICSMCAAGFAWKSQLKRHLLVHSEEKPFSCSSCPKTFRDKRNLERHLLKHLGNKVPTRNNVSCDLCDFKCEYESVLKIHQRKHTGEKPYLCHLCEASYPFSGSLKYHLQSHTGEKPYSCDECQATFKQKATLAKHRLIHTGEKWFVCDICQASFRDKSGLTTHHLSHSGEKAFSCHICQKGFKRKTTLKSHMRIHTGERPYSCNFCGAAFNQSSILWRHLRIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872489;
- 90% Identity
- iTF_00872489;
- 80% Identity
- iTF_00872489;