Lko_32836-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01126142.1:52688-54663[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.031 27 4.6 0.0 22 44 83 105 73 109 0.87 2 10 0.018 16 5.3 0.3 22 45 111 134 107 143 0.89 3 10 5.8 5.1e+03 -2.7 0.0 36 44 143 151 140 154 0.86 4 10 0.0038 3.3 7.5 0.0 21 44 184 207 180 214 0.90 5 10 0.51 4.5e+02 0.6 0.1 22 48 213 238 209 243 0.77 6 10 0.36 3.1e+02 1.1 0.1 23 44 242 263 237 268 0.85 7 10 0.00012 0.1 12.3 0.0 21 44 268 291 264 296 0.90 8 10 0.0006 0.52 10.0 0.0 21 45 296 320 292 329 0.85 9 10 0.33 2.9e+02 1.3 0.0 23 44 326 347 321 352 0.88 10 10 0.45 3.9e+02 0.8 0.0 22 45 381 404 372 409 0.79
Sequence Information
- Coding Sequence
- ATGGTGAGAACTCGAAGTAATTTGTCACGTATTGCCAGTTTGAACGCGAAGACGCAGTGCAATGATCAACAATTAGTACCAAGGGATTTATTTCACTTGGATCACCCAGAGATAACATGTGGACATAGTCTGACTGAAAAGGTGCAAACCCATTGtaccaaaagaaagaattattcatgtattagatgCAAAAAGTCGtttattcaaaaagttcatcTGAAGAAACATTGGCGAGTACATACAGGGGAGAAATCTTTCCAATGTCaaatttgtaaatctttattcagtGGAAGCAGTAGTCTCAAGAGGCACATTTTAACACATTCCAGGGAGAAACCTcttcagtgtgaaatttgtgaatcctcatttaaaagaaaatgtaatctcTTGAGTCACTTGCAAACACATACTGGATTGaaatcatttcaATCATCCAATCTGAAGACTCACATGCTAACACACACTGGGGTGAAAACATTTCagtgtgatatttgtgaaaaatcatttagtttaaaaagtattcttaaaaCTCACATCCAAACACATACAGGAGAGAAACCTgttcagtgtgaaatttgtaaatcctcatTTAGTCAAAGCGGTTATTTGAAGACGCACATGTTAACACATTCTGGGGAGAAACAATTTaagtgtaaaatatgtaaaaaatcatttaatataacaagCTATCTTAAGAGGCACATGCTAACACACTCTGCGGTGAAACCATATCActgtaaaatatgtgaaaaatcattcagtcaaaaatgtaattttaaaattcacattctaaaaCATACTGGCGAGACAccgtttcaatgtgaaatttgtgagtcTTCTTTTAGACAAAGCGGCCATTTTAAAAGGCACTTGTTAACACATTCTGGGGAGAAACCATTTCTCTgcgaaatatgtgaaaaattatttagaacatcATCCAATTTAAACACGCACATGCTAACACACTCTGGGGTGAAACCATTTCTGTGTGAAATATGTGATAAATCATTTACAACATCATCCAATTTCAAGAACCACATGTTAACACATTCTGGGGTGaaatcatttcagtgtgaaatatgtgaaaaatcatttagtctaaaaagttttcttaaaacaCACATCCGAACACATTCTAaggagaaaacatttctttgtgaaatatgtcaaaaatcatttagtttAAAAGGTAATCTTAAACAGCACATCCAAAGACATAACGGAGGGAAAACCTTGcgactCAAGGTGAAAGTCACTAGTTGCTTTAGTGTTCTCTTACCGGGGAAAAACTGTTTCAATGTGAAACATGCAAATCATTTTGGGGAAAATATATGTAAGAAATCACTTGTGGACGCCCTTTCG
- Protein Sequence
- MVRTRSNLSRIASLNAKTQCNDQQLVPRDLFHLDHPEITCGHSLTEKVQTHCTKRKNYSCIRCKKSFIQKVHLKKHWRVHTGEKSFQCQICKSLFSGSSSLKRHILTHSREKPLQCEICESSFKRKCNLLSHLQTHTGLKSFQSSNLKTHMLTHTGVKTFQCDICEKSFSLKSILKTHIQTHTGEKPVQCEICKSSFSQSGYLKTHMLTHSGEKQFKCKICKKSFNITSYLKRHMLTHSAVKPYHCKICEKSFSQKCNFKIHILKHTGETPFQCEICESSFRQSGHFKRHLLTHSGEKPFLCEICEKLFRTSSNLNTHMLTHSGVKPFLCEICDKSFTTSSNFKNHMLTHSGVKSFQCEICEKSFSLKSFLKTHIRTHSKEKTFLCEICQKSFSLKGNLKQHIQRHNGGKTLRLKVKVTSCFSVLLPGKNCFNVKHANHFGENICKKSLVDALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872460;
- 90% Identity
- iTF_00872460;
- 80% Identity
- iTF_00872460;