Lko_33882-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01126121.1:22311-23945[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.018 15 5.3 0.0 22 44 21 43 9 51 0.82 2 11 0.21 1.8e+02 1.9 0.1 22 45 49 72 45 80 0.86 3 11 2 1.8e+03 -1.3 0.0 26 45 81 100 76 107 0.81 4 11 0.0023 2 8.2 0.0 21 44 104 127 99 130 0.90 5 11 0.32 2.8e+02 1.3 0.0 27 44 128 145 127 150 0.89 6 11 0.0032 2.8 7.7 0.0 21 44 178 201 171 208 0.90 7 11 0.56 4.9e+02 0.5 0.0 22 50 207 235 203 239 0.78 8 11 0.23 2e+02 1.8 0.1 23 44 236 257 227 262 0.83 9 11 0.0001 0.091 12.5 0.0 21 44 262 285 258 290 0.90 10 11 0.00092 0.8 9.4 0.0 21 44 290 313 287 318 0.90 11 11 0.62 5.4e+02 0.4 0.2 22 45 355 378 346 382 0.79
Sequence Information
- Coding Sequence
- atgCAAAAAGTCGtttattcaaaaagttcatcTGAAAAACATTGGCGAATATATACAGGGGAGAAGTCTTTCGAATGTCaaatttgtaaatctttattcagtGGAAGCAGTAGTCTCAAGAGGCACATTTTAACACATTCCAGGAAGAAACCttttcagtgtgaaatttgtgaatcctCATTTGACCGAAAATGTAATCTTTTGAGTCACTTGCAAACACATACTGGTTTGaaatcatttcagtgtgaaatatgtgaaaaatcatttaatcaaaaAAGTAAACTTGAAAATCACATccgaacacatactggggagaaaccttttcaatgtgagATTTGTAAATCCTCATTTAGTCAAACTGGAAATTTGAAAACGCACATGTGTGAATTATGTAAAAAGTCATTTAAGAGATCATCCAATCTGAAGACTCACATGCTAACACACACTGGGGTGAAAACATTTCagtgtgatatttgtaaaaaattatttagtttaaaaagtattcttaaaaCTCACATCCAAACACATACAGGGGAGAAACCTgttcagtgtgaaatttgtaaatcctcatTTAGTCAAAGCGGTTATTTGAAGACGCACATGTTAACACATTCTGGGGAGAAACAATTTaagtgtaaaatatgtaaaaaatcatttaatataacaagCTATCTTAAGAGGCACATGCTAACACAATCTGCGGTGAAACCATTTCActgtaaaatatgtgaaaaatcattcagtcaaaaatgtaattttaaaattcacattctaaaaCATACTGGCGAGACAccgtttcaatgtgaaatttgtgagtcTTCTTTTAGACAAAGCGGCCATTTTAAAAGGCACTTGTTAACACATTCTGGGGAGAAACCATTTCTCTgcgaaatatgtgaaaaattatttagaacatcATCCAATTTAAACACGCACATGTTAACACACTCTGGGAACCACATGTTAACACATTCTGGGGTGaaatcatttcagtgtgaaatatgtgaaaaatcatttagtctaaaaagttttcttaaaacaCACATCCGAACACATTCTAaggagaaaacatttctttgtgaaatatgtcaaaaatcatttagtttAAAAGGTAATCTTAAACAGCACATCCAAAGACAACGGAGAGAAAACCTTGcgacGGTTAAAGTCACTAGTTGCTTTAGTGTTCTCTTACCGGGGAAAAACTGTTTCAATGTGAAACAAGTAAATCAATTTGGGGAAAATATC
- Protein Sequence
- MQKVVYSKSSSEKHWRIYTGEKSFECQICKSLFSGSSSLKRHILTHSRKKPFQCEICESSFDRKCNLLSHLQTHTGLKSFQCEICEKSFNQKSKLENHIRTHTGEKPFQCEICKSSFSQTGNLKTHMCELCKKSFKRSSNLKTHMLTHTGVKTFQCDICKKLFSLKSILKTHIQTHTGEKPVQCEICKSSFSQSGYLKTHMLTHSGEKQFKCKICKKSFNITSYLKRHMLTQSAVKPFHCKICEKSFSQKCNFKIHILKHTGETPFQCEICESSFRQSGHFKRHLLTHSGEKPFLCEICEKLFRTSSNLNTHMLTHSGNHMLTHSGVKSFQCEICEKSFSLKSFLKTHIRTHSKEKTFLCEICQKSFSLKGNLKQHIQRQRRENLATVKVTSCFSVLLPGKNCFNVKQVNQFGENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872459;
- 90% Identity
- iTF_00872459;
- 80% Identity
- iTF_00872459;