Lko_12058-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- MBD3
- Assembly
- GCA_002313205.1
- Location
- NNCF01128794.1:296918-322680[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-26 5.7e-23 79.9 0.1 3 73 76 141 74 144 0.92 2 2 0.0085 18 4.6 0.1 28 57 158 192 143 209 0.77
Sequence Information
- Coding Sequence
- ATGTCATCTGGAAAAAAGTTATCAGTGGAGGAGATTGCATTTGAACTAGAGGAAGGAGAGGAAGTGAGGATTTATTCAAGACCTCCGGAAAATCCTCTACTTTCAGACGAGGATTCGGATGACGATAATGAGGCTGATTTGAACCATTTGAGTGGAAAGCAATTACGAGGAATTTCCGAAGCAACGGTTAAAAAGTTCGTTTCTGGTGAAATAGTTCAAGAAGAAAAAAAGAAGTATGAATGCAGTGCTTTACCTAAAGGATGGCAACGGGAAGAAGTAATTCGAAAATCAGGACTGTCCGCGGGAAAAGTTGACGTGTATTATTATAGTCCAAATGGGAAGAAGTTTCGCAGCAAACCTCAGCTCGCTCGGTACTTGGGCGACACACTTGATCTTGCCACCTTTGATTTCCGTTCCGGCAAAGTCAATTCCCTGCTCCTCCGCAAAAACAAGAAGCAGAGAGGGACACAGTTTGATTACAGTCGAGGGGTGCGGAATGATGCATCTCTTGTACCACCCATACGTCAAACAGCTTCTATCTTTAAACAACCTGTGACAGTTTACAAGACTCAGGAAGGAAAAGTGAAGTCTGATTTCAAGCATGGGACTCAGGAGAAACCAAAACAGGAAAATGGGAAAAGTAGTTAtaaGATTGGAGGTGAGGAAACCCTACTTCAATCTGTGGCTACAGCACTTCATGTATCTACCCAGCCTGTCACTGGTCAGACAGGGTCTCGATCAGCTCTTGAAAAAAATCCGGGGGTCTTTCTGAATCCAGACCAACCTCTTGTGCAGGCAGTTGCCGTGGGAGATGAAGATATTAAAAGGCAAGAAGAGAGAGTAGCAACTGCACGAAAGAAATTACAAGATGCTTTAAAAAGATATGTggcataa
- Protein Sequence
- MSSGKKLSVEEIAFELEEGEEVRIYSRPPENPLLSDEDSDDDNEADLNHLSGKQLRGISEATVKKFVSGEIVQEEKKKYECSALPKGWQREEVIRKSGLSAGKVDVYYYSPNGKKFRSKPQLARYLGDTLDLATFDFRSGKVNSLLLRKNKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKSDFKHGTQEKPKQENGKSSYKIGGEETLLQSVATALHVSTQPVTGQTGSRSALEKNPGVFLNPDQPLVQAVAVGDEDIKRQEERVATARKKLQDALKRYVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -