Lko_26667-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002313205.1
- Location
- NNCF01127917.1:44729-66745[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.009 1.2e+02 1.4 0.9 53 84 11 42 3 46 0.88 2 3 9.9e-114 1.3e-109 365.7 32.8 1 300 158 470 158 470 0.90 3 3 0.0082 1.1e+02 1.5 1.9 229 259 500 530 497 537 0.73
Sequence Information
- Coding Sequence
- ATGGCGTCGGAAGAGACCGGCTTCGGTGGAGTGGCTTTGACCGCGGCGACGGAATCCTCTCTGGACGAAGACGCTTCTAATGCGACGAGTGAGGATAGCAGTTCGCTGTTTGAGGACTGCAGCTCCGGGAGCCCCGCGTCGCCGGAACCCCCTGCGCCGCCTTCGCCCGCGATGACCGACGAcggggcgacggcggcgacggagACGACGGTGGCGTGTGTCAACGGCGACGGTCACGACGACGAAGAGGAAGACGTGTTCGACTCCGCGGGCGAAGCGGAGACTGCGGCGGTGGAGGAGGGCGTTAAGGGAAGATCGGAGTCCACTTCGTCGTCTGCCTCCGCCGCACAGCGAACCCCCAGCAGCCCCCGACGCACCCCTTCACTCACCCTCCCCCTCGCTGCCAACGGCGAAGACGGCTCCGTCGAAGACGACGGCATCGTCGAATTCCTCGATAAGAGCAACGATAAAGCTGAGGCTCGGTTGGCTGCCAGACGTCAAGCGCGTGCTGAGGCTCGAGAAATAAGGATGCGTGAACTGGAGAGGCAACAAAAAGAACTGGAAGAGAATTCTGATAAAGTGTATGACATGTACCCAGCAGATCCTGGGAGCAGACCGTCGCGAGCCGCAGCCACTATGTCCAACCCGAGGATCTCCAGAGAGAGCTCGAACAGCTATCAGTCGAGTCGGCGGAGTTCTGAGGATTCTTTGGAAGAAGGGATAAGTCTTCGAGACATGAGACAAGAACTGAAAGAATACGAAGAAAAGTTCCGGAAAGCGATGGTTCAGAATGCACAGTTGGACAATGAGAAAGCTTCTCTGACGTACCAGGTTGAGTTATTAAAGGATCGTCTTGAAGACTTAGAAGAACAACATACTCAGCTCCAGCGAGAACATAAAGACAAATGTAGGGAACACGATCAGCTGAAAAGGACATGGGACAAACTGAATGAGGATATGGAATGGTGTAAAGCCCAACTGCAGGAAAGGGACCAACTCATTCAGGAAGCAGGACTTATGATTGTTGGAGACAACCAGGTATCGAGTGAAGACGACAGCAGTGAGGATGAAGATTCTGGTGAGAAAAGCGAAGCCAAGAAACCTCCGAAGAGGGCGTTAGTGTCCATTGAGAACGCAGAGTTGCTTCAAGGGGCAGGAGAAGGAACGTTAGATGTTCGGCTGCGACGATTTGCTGAGGAACGCAATGAACTCTTAGACCAAGTGAGACATTTGAAATTAGAACTTGAAGATGAAAGAAGTCGTCAGAAATCAGATAGGCTACGACCAGCTGGTGCAGGCGCCAGCCTTAATGGACCTGACACGGATCTTGTTGATATTCaaagagAAGCAAATAAACAACTAGGTGATTATAAGTTTCGACTCCAGAAGGCAGAACAGGATGTTTCTACTCTTCAAGCGActgTTGCTCGATTAGAGAGCCAAGTAATAAGGTATAAGTCAGCTTCAGAATCTGCTGAAAAGGTGGAAGATGAACTGAaggttgaaaaaagaaaacttcagaGAGAGGTGCGTGATCTGACTCAGCAACTCGCCAAAGCTGAGGCAGCGAAATCGGCTCTGAACCACCAGTTCGAGCAGCTCAAGCTCTCCCGATAA
- Protein Sequence
- MASEETGFGGVALTAATESSLDEDASNATSEDSSSLFEDCSSGSPASPEPPAPPSPAMTDDGATAATETTVACVNGDGHDDEEEDVFDSAGEAETAAVEEGVKGRSESTSSSASAAQRTPSSPRRTPSLTLPLAANGEDGSVEDDGIVEFLDKSNDKAEARLAARRQARAEAREIRMRELERQQKELEENSDKVYDMYPADPGSRPSRAAATMSNPRISRESSNSYQSSRRSSEDSLEEGISLRDMRQELKEYEEKFRKAMVQNAQLDNEKASLTYQVELLKDRLEDLEEQHTQLQREHKDKCREHDQLKRTWDKLNEDMEWCKAQLQERDQLIQEAGLMIVGDNQVSSEDDSSEDEDSGEKSEAKKPPKRALVSIENAELLQGAGEGTLDVRLRRFAEERNELLDQVRHLKLELEDERSRQKSDRLRPAGAGASLNGPDTDLVDIQREANKQLGDYKFRLQKAEQDVSTLQATVARLESQVIRYKSASESAEKVEDELKVEKRKLQREVRDLTQQLAKAEAAKSALNHQFEQLKLSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -