Lko_08668-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- tfip11
- Assembly
- GCA_002313205.1
- Location
- NNCF01126733.1:163082-165604[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-93 2.2e-89 299.2 13.3 1 275 403 672 403 672 0.97 2 2 0.063 4.1e+02 -0.1 0.0 245 272 687 714 679 717 0.79
Sequence Information
- Coding Sequence
- ATGTCAGACGAAGAagtggaaaaatttgaaattactgaCTACGATTTAGACAATGAATTTAATATCAATAGACCAAGACGTCGACTCACAAAACACCAACAAATATACGGAATCTGGGCCCATGATAGTGCAGATGAAAGTGAAGGAACTTCCAAGAGAAGAGGTTTATCTCATTCTAAAAACTACACTGCACCTGTAAGTTTTGTGTCTGGAGGAGTTCACCAAGCTGGTAAAAAAGCTGAAAAAGATGTcaagaaggaagaagagaaaggtGATAGTGACGAGGAATCTGATGAGGAAGACCATTCTACAGGAAGACGACGAATTGCAACTACTTCAAGTGAAGAATCGGAGGAAGAAACCAAGTATGGAAATTATCAGTCTTCCAATGTTTCTGGAGGTATTGAAGGAGAGATGGCGGGTTTTCGTAGAAAAGGTAATTTCCGAAACCCATCTTTCATTGAAAGAGGAGTAGGATCTTGGGAAAAACACACCAAGGGAATTGGAGCTAAACTTTTACTTCAAATGGGATACCAACCTGGTAAGGGTCTAGGGAAAGATCTCCAAGGAATTTCTGCTCCTGTTGAAGCATATCAACGCAAAGGTAGAGGAGCAATTGGTGCTTATGGATCAGAAAAGAGCAAGGTCAAAAAACTTGACTCAGAAGAAGAAGCTGATaaagaatttgttgaaaaattgtcGCAGTGGCGAAGAAATGATGTATCTGATAGAAAGAAAAAGGTTCGATATGTCTACAAAAGTGTTGATGAAGTTATTGAACAAGGAAAGCATCAAAAACCCTCTTCAAGTATCCGTGTTAAAGACTCAAGTCAGATTAGTAAAGTGAAGGTGATAGATATGACTGGTCCCCAGCAGAGAGTGCTTTCTGGATATCATGCCATTGCAGGCCAGCAGCGGCCATCTGAAGAGTGGGAAGTtcgtaaagataaaaaattttctaattttgttcttCCAGAACTCCAACATAACCTTAATATATTGATGGATATGTGTGAACAAGATATAATTGAGAATGATCGAAGAATGCGTTATATTGatgataaaaaagtaatgttaGAGCAGGAATCAATTACCTTAAAGACATGTATTGAACGTGAAGATAAACAAATTGAAGCACTGGAACATGTTTTGTCGATGATAAAAAGTATGATGGAAATAAGTGGTGACAAAGTAGATCCTTTAACTCTAGATGCTGCAGCggaacatttcaaagaaattcaagAAGACTATTATGAAGAATATGTAATGTATGATATTGGAAGTCTAGCTGTTCAAATTGTTGGAcctttattgaaagaaaaacttgCAAGCTGGAAACCTCTTGATGACCCAAGGATTCCATTAGGTTTGTTCAAACAGTGGAAAGATATATTGGAAATGGATAACAAGGGAACGCTCTCAAGTGGTATGTGTGAAGATCCTTATCATAAGTTGTTATGGGAAACATGGATGCCATATGTAAGAATTGCTATCAGTAACTGGAATTGTAGAAATTGTGAACTATTGATTGAACTTTTGGAGCACTGGTTACCCCTTATTCCTCTGTGGATACTAGAAAACATTCGTGAACAGCTTGTATTACCTCGTATACAGAATGAAGTTGAGAATTGGAATCCTATGACTGATACAATGCCTATTCATGCCTGGATTCATCCTTGGATTCCTCTCCTGGGAGGGCGTTTAGAGAGCACTGTTTATCCTGTGATCAGACATAAGCTCAGTAAAGCTTTGGTTAATTGGCACCCATCAGATCCATCTGCAAAATTCATGTTGAAACCTTGGCTCCAGGTGTTTAACAGAGGTGATATGGATGCATTCCTTGTGAAAAATATAGTGCCAAAGTTACAAATATGTCTGCAGGAACTTGTTATTAATCCTCATGAACAACATTTAGAGAAATGGAATTGGGTTATGGATTGGGAAGGATTGCTACCAGTGTTTTCCTTATCTGGTCTGTTAGAAAGGTGCTTCTTTCCTAACTGGTTGCAAGTCTTAAATATGTGGCTGGCATCAAATCCAAATTATGATGCAATTTGTTCTTGGTATATGGGTTGGAAGGGAATGTTTTCTGAAGCTCTTTTGGCCCAACCTGGAATTAAGGAGCAATTTAGGAAAGCACTAGAAACTATGAACCGTGCTGTTCAGCACCCAGGGCATGTGGCATCTCAGGCACCTGGTGCATTAGAAACTGTCTCTTACCTTACAAACTTGGAGCAAGCACCCCATCAATCAAGAGATCAAGAATCCCGATACGAATCTTTGGCTGAAGCCGTGCGTGTTGCGAATCAAGTGCCACAAGGATTCAGAGAATTGGTTCAGAAGAACTGTGAAGAACGGGGAATAGTTTTTGTGCCAATTCCTAAACGTTATCGTGAAGGAAAACAGGTTTACAGATGCGGTAAAATACTTGTGTACATTGATAGGAACGTAATTTTTCTTAGTGAAAATGGAACTGCGTGGCGACCCACATCTCTAAATGGATTGTTAGATATGGCTGTGTAA
- Protein Sequence
- MSDEEVEKFEITDYDLDNEFNINRPRRRLTKHQQIYGIWAHDSADESEGTSKRRGLSHSKNYTAPVSFVSGGVHQAGKKAEKDVKKEEEKGDSDEESDEEDHSTGRRRIATTSSEESEEETKYGNYQSSNVSGGIEGEMAGFRRKGNFRNPSFIERGVGSWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEAYQRKGRGAIGAYGSEKSKVKKLDSEEEADKEFVEKLSQWRRNDVSDRKKKVRYVYKSVDEVIEQGKHQKPSSSIRVKDSSQISKVKVIDMTGPQQRVLSGYHAIAGQQRPSEEWEVRKDKKFSNFVLPELQHNLNILMDMCEQDIIENDRRMRYIDDKKVMLEQESITLKTCIEREDKQIEALEHVLSMIKSMMEISGDKVDPLTLDAAAEHFKEIQEDYYEEYVMYDIGSLAVQIVGPLLKEKLASWKPLDDPRIPLGLFKQWKDILEMDNKGTLSSGMCEDPYHKLLWETWMPYVRIAISNWNCRNCELLIELLEHWLPLIPLWILENIREQLVLPRIQNEVENWNPMTDTMPIHAWIHPWIPLLGGRLESTVYPVIRHKLSKALVNWHPSDPSAKFMLKPWLQVFNRGDMDAFLVKNIVPKLQICLQELVINPHEQHLEKWNWVMDWEGLLPVFSLSGLLERCFFPNWLQVLNMWLASNPNYDAICSWYMGWKGMFSEALLAQPGIKEQFRKALETMNRAVQHPGHVASQAPGALETVSYLTNLEQAPHQSRDQESRYESLAEAVRVANQVPQGFRELVQKNCEERGIVFVPIPKRYREGKQVYRCGKILVYIDRNVIFLSENGTAWRPTSLNGLLDMAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -