Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421926.1:153118-156159[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.021 4.7e+02 2.3 0.1 14 46 70 100 64 107 0.75

2 8 0.00013 2.9 9.4 0.6 7 47 88 129 82 133 0.84

3 8 0.00035 7.9 8.0 0.0 20 46 158 184 150 190 0.81

4 8 0.00071 16 7.0 0.1 21 52 187 218 182 220 0.91

5 8 0.039 8.9e+02 1.4 0.0 23 52 217 246 213 247 0.79

6 8 0.0071 1.6e+02 3.8 0.0 23 52 245 274 240 276 0.90

7 8 0.00036 8.2 7.9 0.0 23 50 342 369 338 373 0.88

8 8 0.1 2.3e+03 0.1 0.0 20 45 368 393 363 399 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.021	4.7e+02	2.3	0.1	14	46	70	100	64	107	0.75
2	8	0.00013	2.9	9.4	0.6	7	47	88	129	82	133	0.84
3	8	0.00035	7.9	8.0	0.0	20	46	158	184	150	190	0.81
4	8	0.00071	16	7.0	0.1	21	52	187	218	182	220	0.91
5	8	0.039	8.9e+02	1.4	0.0	23	52	217	246	213	247	0.79
6	8	0.0071	1.6e+02	3.8	0.0	23	52	245	274	240	276	0.90
7	8	0.00036	8.2	7.9	0.0	23	50	342	369	338	373	0.88
8	8	0.1	2.3e+03	0.1	0.0	20	45	368	393	363	399	0.78

Sequence Information

Coding Sequence: atgttgacatTGACTATCAAGGTGGAGGTGGACATTGAGAAGTCAGAGTCAGAGCTAGAGGAGACCGCGGAGGGTGCGAGTGAGACGGCAGGCTGGTGTGGAAACGAGACGGCGGATTGGTGCGAGAGCAAGAACGCGCAGGACGCGAAAGAAGAGCAACAAGATAATTGGGTCACGGGACACGATGTCCCGGCGCCCGGCGATGGAAGGCCCGCCTCCGGCGCGAGCAGAGATTACGTCTGCAAAGTATGCACTAAAGCATTCACGCAGCCGGGCACCTTGCGCACCCACATGCGGATCCATACCGGCGAGCGACCCTACGAATGTAAACTATGTGATAAGCGGTTCAGACAATGGAGCCATTTGAAACGACACGAACGCCTTCACAAAGGAGTGAAACTATATATTTGCGATATCTGTAATAAAGGGTGCGCTGAACTCGACCATTTGAAGAAACATAAACGAGttcatactaaagaaaaaccgTTCACGTGCGGGATTTGTAACAAGGGATTCGCGCAGGCGAACACTTTGAAGAATCACGAGAGAATACATACTGGAGAAAAACCTTTTCAAtgtgaaacatgtaaaaaagagTTCACAGAGTCCAGCACTTTAAGGAGGCATGAACGAGTGCATACTGGTGCTAAACCATATAGTTGTGGTTTGTGCAAGAAGGAATTCGCGCAGTTAAATACTTTAAGGAACCACGAAATGACTCATACGGGTGCTAAACCATACGGCTGCGACATATGTAAAAAGAGTTTCTCCAAATTTAGCAGTTTAAAACGACATGAGAAAGTACATACCGGCGCGAAGCCATTTGCTTGTAAAGCATGTAAAAAAGAGTTTTCCGAATTGAGCAGTCTGAAGAGACACGAGCGAGTACATACTGGAGAGAAAGCTTATAACTGTAGTTCGTGCAAAAAAGATTTCACAGAATACGGCAGTTTGAAAAGACATCAAAGAATTCACAAGCGCGaagaacaaaatataaaaaacggaattattaaaaaaaaattaaggccaTACACGTGCGACATATGTAACAACGGGTTTACACAAATGAGTAGTTTGAAAAGACATGAAAAGTCAGTACACACGGCAGAGAATGCTTTTACATGTAGATTGTGCAAAAAAGATTTCACGGAATTTGGCAGTTTGAAAAGGCATCAGAAAATTCACTTGCGCAAACTAAATCTACAAGAAACTGTAGAAGTTactaaataa
Protein Sequence: MLTLTIKVEVDIEKSESELEETAEGASETAGWCGNETADWCESKNAQDAKEEQQDNWVTGHDVPAPGDGRPASGASRDYVCKVCTKAFTQPGTLRTHMRIHTGERPYECKLCDKRFRQWSHLKRHERLHKGVKLYICDICNKGCAELDHLKKHKRVHTKEKPFTCGICNKGFAQANTLKNHERIHTGEKPFQCETCKKEFTESSTLRRHERVHTGAKPYSCGLCKKEFAQLNTLRNHEMTHTGAKPYGCDICKKSFSKFSSLKRHEKVHTGAKPFACKACKKEFSELSSLKRHERVHTGEKAYNCSSCKKDFTEYGSLKRHQRIHKREEQNIKNGIIKKKLRPYTCDICNNGFTQMSSLKRHEKSVHTAENAFTCRLCKKDFTEFGSLKRHQKIHLRKLNLQETVEVTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00871554;
90% Identity: iTF_00871554;
80% Identity: iTF_00871554;